Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001659765.1_202016-06-08] 52 sequences; 10,081,862 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 181 2e-40 seq6 132 1e-25 seq10 87.8 4e-12 >seq7 Length=888749 Score = 181 bits (200), Expect = 2e-40 Identities = 311/444 (70%), Gaps = 7/444 (2%) Strand=Plus/Minus Query 268854 TTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCT 268913 |||| ||||| || || | || ||||| || || || ||| | || ||||| |||| Sbjct 211452 TTCTAGCGTTCTTCGCTGCATCCGACGGTATTGTGAATGAGAATTTGGTCGAGAACTTCT 211393 Query 268914 GTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAA 268973 | || || || ||||||||||||| || || ||||| ||||| || || |||| Sbjct 211392 CTGCCGAAGTGCAAATTCCTGAAGCCAAGTGCTTCTACGGGTTCCAAATCATGATGGAAA 211333 Query 268974 ATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA-TAGATGATAACAACGAA 269032 | || || || || | |||| | | || || ||||| || | ||| || ||| || Sbjct 211332 ACATCCACTCTGAAACGTACTCTTTGTTGATTGATACCTACAGTAGG-GACTCCAAGGAG 211274 Query 269033 AAGAAAAGACTATTTTCTTCTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATG 269091 | ||||| | | || || ||| || | ||| |||| | ||||| Sbjct 211273 GCTGATTTCTTATTTAATGCCATTGAAAACATCCCACCAA-TCAGAGAAAAGGCAGAATG 211215 Query 269092 GGCTCTGAAATGGATAAACGAT--AGC-GCGCCTTACGGAGAAAGGTTAGTTGCTTTTGC 269148 ||| | | ||||| | ||| || || | ||| | ||||| ||||| || ||||| Sbjct 211214 GGCCATTAGGTGGATTCAAGATGAAGAAGCCCTTTATGCTGAAAGATTAGTCGCATTTGC 211155 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 ||| || |||||||| ||||| || |||||||| || || ||||||||||||||||| | Sbjct 211154 CGCAGTTGAAGGTATCTTCTTCTCAGGGTCTTTCGCTGCCATCTTTTGGTTGAAGAAGAA 211095 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || || |||||||| |||| ||||||||||||||||| |||| ||||||||||| || Sbjct 211094 GGGTCTGATGCCAGGTCTAACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCA 211035 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 |||||| || ||| ||||||| Sbjct 211034 TACCGACTTTGCCTGTCTATTATT 211011 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | || | || ||||| ||||| || || || ||| Sbjct 735284 ATACCACCTCTTAATCTCAAGACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCA 735225 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||||||||||||| ||||| |||||||||||||| | ||||||||||| ||| Sbjct 735224 GACAAAGTTCTACCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCCGGA 735165 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||||| || || || || | |||||| || ||| Sbjct 735164 GGAATACCTTCGTTGTCTTGGATCTTTGACTTAACGTTGTCGATGGTATCAGAAGATTCA 735105 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||||||||||||||| | || || || || |||||||| Sbjct 735104 ACCTCCAAGGTAATAGTCTTACCAGTCAAAGTCTTAACGAAAATCTGCAT 735055 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | || | |||||||| |||||||| || || ||| Sbjct 735968 ATACCACCTCTTAATCTCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTGTAATCA 735909 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||||||||||||||||| |||||| |||||||||||||| |||||||| || || Sbjct 735908 GACAGAGTTCTACCGTCTTCTAATTGTTTACCAGCAAAAATTAGTCTCTGTTGGTCTGGG 735849 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || || || || | |||||| || ||| Sbjct 735848 GGAATACCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGATTCC 735789 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||||||||| || || || || || || || ||||| Sbjct 735788 ACTTCCAGAGTGATAGTCTTACCGGTTAGAGTCTTAACGAAAATTTGCAT 735739 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || || || | || | |||||||| ||||| ||||| || ||| Sbjct 735512 ATACCACCTCTTAGTCTTAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAATCA 735453 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||||| ||||| || ||||| || || || ||||||||||| || |||||||| || || Sbjct 735452 GATAGTGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGGTCGGGT 735393 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||||| || || || || | ||| ||| || || Sbjct 735392 GGAATACCTTCCTTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAAGACTCG 735333 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || ||||| |||||||| || || || || || || ||||| Sbjct 735332 ACTTCTAAAGTGATAGTTTTACCAGTTAGAGTCTTGACGAAAATTTGCAT 735283 Score = 159 bits (176), Expect = 8e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| |||||||| || | || | || | ||||| |||||||| || || || ||||| Sbjct 736422 TCCACCTCTTAGTCTTAAAACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGA 736363 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||||||||||||||| | ||| || || |||||||| | |||||||| |||||||| Sbjct 736362 CAGAGTTCTACCGTCTTCCAATTGCTTACCTGCAAAAATCAATCTCTGTTGGTCAGGAGG 736303 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| || |||||||| || | ||| ||||| || | ||||| || ||| || Sbjct 736302 AATACCTTCCTTGTCCTGAATTTTAGATTTAACATTATCGATAGTATCAGAAGATTCCAC 736243 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || || || |||||||| | ||||| ||||| || ||||| Sbjct 736242 TTCCAAAGTGATGGTTTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 736195 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || || || || | |||||||| ||||| || || || ||| Sbjct 736196 ATACCACCTCTTAATCTTAGAACCAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAATCA 736137 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || || || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 736136 GACAGGGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGA 736077 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||||| || || || || | ||| ||| || || Sbjct 736076 GGAATACCCTCCTTATCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAAGACTCG 736017 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || ||||| |||||||| || || || || || || ||||| Sbjct 736016 ACTTCTAAAGTGATAGTTTTACCAGTTAGAGTCTTGACGAAGATTTGCAT 735967 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | || || |||||||| || || || || |||||| Sbjct 849266 ATACCACCTCTCAATCTTAGAACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCA 849325 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| ||||| | ||| || ||||| || |||| || ||||| ||||| Sbjct 849326 GACAACGTTCTACCATCTTCCAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGT 849385 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||||||||||| || || || || | ||| || | ||| Sbjct 849386 GGGATACCTTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATGGTGTCAGAGGATTCG 849445 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 ||||| | || || ||||||||||| | || || ||||| Sbjct 849446 ACCTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 849486 >seq6 Length=915354 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || || | || || || ||||| || || || || ||||| || Sbjct 604728 CCACCTCTCAATCTTAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 604787 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||| | ||| || |||||||| || | || ||||| ||||| || Sbjct 604788 AAGGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 604847 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || || || ||||||||||| | || ||||| || | || || || ||| || Sbjct 604848 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 604907 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| |||||||| || | || || ||||| |||||||| ||| Sbjct 604908 TCTAGGGTAATGGTCTTACCCGTCAAAGTCTTGACAAAAATCTGCATCTTG 604958 >seq10 Length=257440 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 165134 GATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTA 165193 ||||| || |||||| ||| ||| |||||||||||| || | | | ||||| || Sbjct 39209 GATCCGGTATTACATCATGAGTTAAAAAGATGGGCAGACATTTTCCTAGTCGCACCTCTA 39268 Query 165194 ACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATA 165253 | ||||||| |||||| |||||||| ||||||||||| | || || ||||| ||| | Sbjct 39269 TCCGCAAACACTTTAGCTAAGATAGCGTACGGTATCTGTGACAATTTATTAACCTGTGTT 39328 Query 165254 GTTAGAGCGTGGA 165266 | |||| |||| Sbjct 39329 CTGAGAGATTGGA 39341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397632880816