Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001659765.1_202016-06-08] 52 sequences; 10,081,862 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 154 7e-33 seq3 120 2e-22 >seq6 Length=915354 Score = 154 bits (170), Expect = 7e-33 Identities = 286/420 (68%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || ||||| |||||||| | ||| ||||||||||| || | ||||||||||| Sbjct 273781 CATGAACAAATCAGGAATCCATAATGCTGGGAATAAATCTCTTGCACGAATTTCTTCTTT 273840 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || |||||| | | ||| | ||||||||| |||||||||||||||||||| ||||| Sbjct 273841 ACCATGGTTCTTTCTGATATCAATGAAATCAAAGATATCTGAGTGCCATGGTTCCAAATA 273900 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 | || || || ||| || ||||||||||| || || | |||||| | || Sbjct 273901 AAGGGCGAATGCTCCAGGTCTCTTATTGCCACCTTGATCCACATAACGTGCAGTGTTGTT 273960 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||||| | |||||| | ||| ||| | ||| || || || | ||| | || Sbjct 273961 AAAAACACGAACCATTGGGATTAAACCATTGGAAGTACCATTAGTACCTGCAATGTAAGA 274020 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || || || | ||| | ||| ||| | || || |||||||| || ||||| Sbjct 274021 ACCCGTAGAACGAATGTTATGAATATGCAACCCAATACCACCAGCAGTCTTGGAAATCAT 274080 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||| ||| | || ||| |||| |||| ||| ||| ||||||| | | | Sbjct 274081 GGCACATTCTTTTAATGAATCATAAATACCTTCAATGGAATCGTCTTTCATCGCCACAAG 274140 Query 26293 AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATG 26352 |||||||| | | ||| | ||| | || |||| ||| || | || || | |||||| Sbjct 274141 GAAACAAGATGCCATTTGTGGATGTGGAGTACCTGCATTGAAAAGAGTTGGAGAAGCATG 274200 >seq3 Length=1313108 Score = 120 bits (132), Expect = 2e-22 Identities = 292/437 (67%), Gaps = 14/437 (3%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || |||||||| ||||| | |||| ||||||||||| ||||||| ||| || || Sbjct 879008 CATGAACAAATCTGGTATCCATAGTGCAATGAATAAATCTCTGGCTCTCAATTCATCCTT 879067 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || || || ||| ||| | || |||||||||| |||||| ||||| ||||| | ||| Sbjct 879068 ACCATGGTTTTTTCTTAATTGCAAAAAATCAAAAACATCTGAATGCCAGGGTTCCAGATA 879127 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| | |||| | || ||| || || ||||| ||||| || || | ||| Sbjct 879128 TATACAGTATGCACCTGGACGCTTGTTTCCTCCCTGGTCTACATATCTAGCCGTATTATT 879187 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 |||||| | ||| || | || |||| | |||| || || | | | | | Sbjct 879188 GAAAACACGAAGCATGGGGATTAGTCCACTAGAAATACCATTAGATCCCGATACATAAGC 879247 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACC---AGCCCATTTTGAAAT 26229 || ||| || || | ||||| |||||| |||||||| |||| || || || Sbjct 879248 CCCATTCGCCCTTATGTTAGAAGCATAAATACCAATTCCACCTGAAGCC---TTGGAGAT 879304 Query 26230 AGCTGCACAATC-TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTA 26288 | || ||| || || ||| ||| ||||| | || ||| ||||||| || | Sbjct 879305 AAGAGCTGTATCATGCAA-TGTTCGGAAGATTCCATCAATAGAATCCTCTTTCATACCAA 879363 Query 26289 ATAAAAAACAAGAAGATA---ATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTG 26345 || |||||| ||||| | |||| || | |||||||| ||||| ||||| || | Sbjct 879364 CTAGAAAACAGGAAGAAAGATATTG---ATTAACTGTTCCTGCGTTAAACAATGTGGGCG 879420 Query 26346 TAGCATGAGTATAATAT 26362 |||||| || | ||| Sbjct 879421 ATGCATGAATAAAGTAT 879437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039839635900