Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Candida_20versatilis_20[genbank_20GCA_5F001659765.1_202016-06-08] 52 sequences; 10,081,862 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7 168 2e-36 seq6 152 1e-31 seq3 96.9 8e-15 >seq7 Length=888749 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | ||| ||||| ||||| || |||| ||||||||| | | ||||| Sbjct 735500 AGTCTTAGAACCAAGTGCAGAGTAGATTCCTTCTGGATATTGTAATCAGATAGTGTTCTG 735441 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| |||||||| ||||| || || |||| ||||||||||| |||||||||||| Sbjct 735440 CCATCTTCCAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGGTCGGGTGGAATACCTTCC 735381 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || |||||| ||| || ||||||||||| || | || || ||||| ||| Sbjct 735380 TTGTCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCTAAAGTG 735321 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || | ||| || | ||| | |||||| Sbjct 735320 ATAGTTTTACCAGTTAGAGTCTTGACGAAAATTTGCAT 735283 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||||||||| || |||| |||||||| | ||||||||| || Sbjct 735270 TCTCAAGACCAAGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAAAGTTCTACC 735211 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| || ||||| ||||| || || | || ||||| || || ||||||||||| || Sbjct 735210 GTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGAATACCTTCGTT 735151 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||||| ||| || |||||||| || || | ||| || || || || || Sbjct 735150 GTCTTGGATCTTTGACTTAACGTTGTCGATGGTATCAGAAGATTCAACCTCCAAGGTAAT 735091 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | ||||| Sbjct 735090 AGTCTTACCAGTCAAAGTCTTAACGAAAATCTGCAT 735055 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| | ||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 849280 TCTTAGAACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAACGTTCTACC 849339 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||||||||| | || ||||||||| || || ||||||||||| Sbjct 849340 ATCTTCCAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 849399 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || |||||| ||| || || |||||||| |||| ||| || || || ||||| Sbjct 849400 GTCCTGAATCTTTGACTTGACGTTGTCAATGGTGTCAGAGGATTCGACCTCCAAAGTGAT 849459 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || |||||||| || Sbjct 849460 GGTCTTACCAGTCAAAGTCTT 849480 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| || || | |||||||| | || |||||| || Sbjct 735954 TCTCAAGACCAAGTGCAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAGAGTTCTACC 735895 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || ||||| || || |||| |||||||| || |||||||||||||| Sbjct 735894 GTCTTCTAATTGTTTACCAGCAAAAATTAGTCTCTGTTGGTCTGGGGGAATACCTTCCTT 735835 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || |||||||| || || | |||||| || | ||||| Sbjct 735834 GTCTTGGATCTTGGACTTGACGTTGTCGATGGTATCAGAAGATTCCACTTCCAGAGTGAT 735775 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||| || | ||| | |||||| Sbjct 735774 AGTCTTACCGGTTAGAGTCTTAACGAAAATTTGCAT 735739 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || ||||| ||||| ||||| || |||| |||||||| | || ||||| || Sbjct 736182 TCTTAGAACCAGGTGCAGAGTAGATTCCTTCTGGATGTTGTAATCAGACAGGGTTCTGCC 736123 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || || ||||| ||||| ||||| |||| ||||||||| || |||||||| ||||| Sbjct 736122 ATCCTCAAGTTGCTTACCAGCAAAGATTAGTCTTTGTTGGTCTGGAGGAATACCCTCCTT 736063 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || || |||||| ||| || ||||||||||| || | || || ||||| ||||| Sbjct 736062 ATCCTGAATCTTTGACTTGACGTTGTCGATGGTGTCGGAAGACTCGACTTCTAAAGTGAT 736003 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | ||| || | ||| | |||||| Sbjct 736002 AGTTTTACCAGTTAGAGTCTTGACGAAGATTTGCAT 735967 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| | || | ||| ||||| || ||||| |||| |||||||| | || |||||| Sbjct 736412 AGTCTTAAAACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGACAGAGTTCTA 736353 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || ||||| | ||||| || || || || | || |||||||| || |||||||||||| Sbjct 736352 CCGTCTTCCAATTGCTTACCTGCAAAAATCAATCTCTGTTGGTCAGGAGGAATACCTTCC 736293 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| || || || || ||| ||||| || || || | |||||| || || ||| Sbjct 736292 TTGTCCTGAATTTTAGATTTAACATTATCGATAGTATCAGAAGATTCCACTTCCAAAGTG 736233 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| ||||| | || | |||||| Sbjct 736232 ATGGTTTTACCAGTCAAGGTTTTCACAAAGATTTGCAT 736195 >seq6 Length=915354 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | ||| | |||||||| ||||||| ||||| |||| ||| ||||| || Sbjct 604739 TCTTAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACC 604798 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || || ||||| ||||| Sbjct 604799 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCCTCCTT 604858 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| || ||||| ||| ||| || || ||||| || | ||| || |||| || || Sbjct 604859 GTCCTGAATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 604918 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||||||||| || | || | ||||| || Sbjct 604919 GGTCTTACCCGTCAAAGTCTTGACAAAAATCTGCATCTT 604957 >seq3 Length=1313108 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || ||||| || || || |||||||| || | |||||| Sbjct 1053257 GAAAATTTGACCATCGGTAATGGAAATAACGTTAGTTGGAATATAAGCGGAGATATCACC 1053316 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||| ||||||| || || ||||||||||| || ||| ||||| Sbjct 1053317 ACCTTGGGTTTCGATGACTGGCAAGGCTGTTAGGGAACCAGCACCA 1053362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530405476088