Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq13 280 2e-70 seq10 253 2e-62 seq28 96.9 4e-15 >seq13 Length=360411 Score = 280 bits (310), Expect = 2e-70 Identities = 1152/1810 (64%), Gaps = 31/1810 (2%) Strand=Plus/Minus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 |||||||| ||||| || | || ||||||||||||| ||||| || | || Sbjct 46576 TAGTACATACCCGTCTTCAATCCCTTCTTCCATCCGTAAAAGTGCATGGAAGTCAACTTA 46517 Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966 | | || ||| || ||||| |||| || || ||||| || || || | Sbjct 46516 CCCATAGTAGGTTCTCTGATGTGGATGTTCAACGACTGTGACTGATCAATAAACGCAGCT 46457 Query 52967 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACT 53026 ||||| |||||||| | ||||| ||| || | |||||||| | |||||||| | Sbjct 46456 CTGTCGGCAGCCATGTCAATGATATGCTTCTGAGAGATTTCCCACACGGTTTTATATAAA 46397 Query 53027 CGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATAGATCCACCATCTACCATAATC 53083 ||||| || || ||||| | |||| | |||||| ||||| | | || || Sbjct 46396 CGCTTGATTTCGTCTGGGACATTTGGTAAAGACTGAATGGATCCGTTGTTGGCAATGATG 46337 Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATG 53139 | ||||| || | |||||||| | | || || || || || | | | || Sbjct 46336 TTGTTCTTCATATTGTCATTCCAAA----TACCTAAGTCAACTAAGTCCTTCAACATGTG 46281 Query 53140 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATA 53199 || ||||| | || || || || | | ||||| | | |||||| || || || Sbjct 46280 TGGGTTAACAATCTGGAACTCGCCGGCAAGCACTCTTCTGGAGTAAATGTTGGATGTGTA 46221 Query 53200 CGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 ||||| | | || || || ||||| ||||||| ||| || || || ||||| || || Sbjct 46220 AGGTTCAAAGCATTCGTTGTTACCCAAGATTTGAGAAGTAGAGGCTGTTGGCATCGGAGC 46161 Query 53260 CACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATT 53319 || | ||| |||||| ||||||| | | | || | || | || ||||| | Sbjct 46160 AACAAGCAAAGAATTTCTGAGACCGTGTTTGGCCAAATTTTGCTTCAAAGTATCCCAGTC 46101 Query 53320 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG-AATACCGTTACTGGCGT 53378 ||| | || || || || | ||| || || | | Sbjct 46100 CCACAACTCGGATGGCTTTCTGTCCCACAAGTCGTACTGCAACAATCCCTTTGACGCAGG 46041 Query 53379 ACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA 53438 | || ||| ||||||| || ||||| ||||||| || ||| || || | || || | Sbjct 46040 A-GAACCTTCATATGTCTCATATGGACCTTCCTCCTGAGCAAGCTCGATAGATGCTTCCA 45982 Query 53439 ATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTAT 53498 ||| | | ||||||||| ||||| |||| | || | |||| |||||| || | Sbjct 45981 CAGCAGCATGATAAATGGTCTCGAATATCTGAATGTTCAACTCTTTAGCTTCCTGGGAGT 45922 Query 53499 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 53558 | || || | | ||| || || || || || | |||||||| |||| | | |||| Sbjct 45921 CGAAAGGCAATCTCAAGGACATGAATGCATCAGCAAGACCTTGAACTCCAAGAGCAATAG 45862 Query 53559 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 53618 |||| | |||| |||| || || ||||| || ||| ||| |||| | || || | Sbjct 45861 GTCTGTTTCTCATATTGGATCTTCTGGCTTCCTCAACAGGGTAAAAATTTCTGTCAATGA 45802 Query 53619 TTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC----- 53673 || | || | |||||| || || ||| ||| || | || || ||| | Sbjct 45801 TTCTGTTCAAGTTTCTAGTAACAACCTTGGTCACCTCGTGCAACTTATCAAAGTTGTACC 45742 Query 53674 ---AAATTG-TCCATCTATTACAAACA-TGTT--CAATGCAATAGATGCCAGATTACAAA 53726 || | | | ||||| | ||| | || ||| ||||| || |||| ||||| | Sbjct 45741 AGGAACTAGATGCATCTTTCTCAACGAATGAAGGCAAAGCAATGGAGGCCAAGTTACAGA 45682 Query 53727 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 53786 | || || || | | | || | | |||||| || | ||| | |||| Sbjct 45681 CAGCAACTTCTTCTGGGGAAGAGTACTCGACAATCTCACAACACAAGTTAGATGATTTGA 45622 Query 53787 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 53846 | | || || || | ||| ||| | || |||||||| |||||||| || | ||||||| Sbjct 45621 TAATACCCAAGTTCTTTTGGTTAGTTTTCTTGTTACAAGCATCCTTGTACAACATGAATG 45562 Query 53847 GCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTA 53906 | || || || ||| | || | ||| | || | | ||| | ||||||| | Sbjct 45561 GAGTTCCTGTCTCAGTTTGCGCTTCCAAGATAGAGTACCAAAGCTTTTGAGCCTTGACGG 45502 Query 53907 TAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCC 53966 | ||| | | |||||| || || | ||||| ||||||||| || || Sbjct 45501 TGGATCTTCCACGGCCTTCTCTCTCATACTTTTCGTACAAAGCTTCAAACTCATCGCCGT 45442 Query 53967 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 54026 | |||| |||| |||||| ||||| ||| | | ||| | ||| || |||| | | Sbjct 45441 AGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAACAAAGTCCAGTCACCGTTTTGTT 45382 Query 54027 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 54086 |||| ||||| || | ||| || ||||||||||| || | |||||||| |||| Sbjct 45381 CAACTCTCTTCATGAACAAATCCGGGATCCAAAGAGCAGGGAACAAATCTCTGGCTCTAA 45322 Query 54087 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 54146 ||| || || || |||||| ||| |||| ||| | | ||| |||| |||||| | Sbjct 45321 TTTCTTCCTTACCGTGGTTCTTTCTAATGTCGATGAAGTCGAAAATGTCAGCATGCCAAG 45262 Query 54147 GTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 54206 | |||||||| || | | | | || |||| ||||| || || || || | || | | Sbjct 45261 GCTCCAAGTAAATCGCAAAAGCGCCTGGCCTCTTGTTGCCACCTTGGTCGACATAACGTG 45202 Query 54207 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGG 54266 | ||||| || |||| | || ||||||||| ||||| || || | ||| || || || | Sbjct 45201 CTGTGTTGTTGAAAACACGCACCATTGGAATGATACCGTTAGAAGTACCGTTAGTACCTG 45142 Query 54267 AGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326 || || ||| | | || || || | ||| || || || || | | Sbjct 45141 CAATGTAAGCGCCAGTACTTCTGATGTTGTGGATGTGCAAACCAATACCACCAGCACTCT 45082 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 | || ||||| |||||| ||||| || || || || || || || |||||| ||| Sbjct 45081 TGGAAATTAAAGCGCATGTCTTTAATGTGTCGTAAATACCGTCGATGGAGTCATCCTTCA 45022 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 || || || ||||| ||||||||| | | || || ||||| || ||||| | Sbjct 45021 TGGCAACAAGGAAACAAGACGACATTTGGGGGCTTGGGGTACCTGCATTGAACAAGGTTG 44962 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTA 54506 ||||| |||| ||||| || | | || | | |||||| || ||||| | || | Sbjct 44961 GAGAACCGTGAGTAAAGTATCTCTGGGACATCAAATTGTAAGTTTCGATCACACGTTCAA 44902 Query 54507 TATCCCATT--GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 | | |||| ||||| || || || || | ||| | || ||||| ||||||||| | Sbjct 44901 TGT--CATTCCCGTGAATACCAACCGCAACTCTCATGATCAAATGCTGTGGTCTTTCAGC 44844 Query 54565 GATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 | ||| ||| | | | |||||||| ||| |||||||||| || ||||| || ||||| Sbjct 44843 AACCTTCCCGTTGACTCTGAGCAAGTATGATCTTTCCAAAGTCTTGAAACCGAAGTAGTT 44784 Query 54625 GTA--TGAAA 54632 ||| ||||| Sbjct 44783 GTAGTTGAAA 44774 >seq10 Length=432243 Score = 253 bits (280), Expect = 2e-62 Identities = 566/840 (67%), Gaps = 26/840 (3%) Strand=Plus/Plus Query 23865 TTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTG 23924 || |||||||| || || || ||| | || || || || ||||| || ||| |||| ||| Sbjct 412363 TTCTCGAAAAAGTTGGTCTTTCCTGCCAAGGAAATGTTCTCCATAAAGTCGAATGGGTTG 412422 Query 23925 GTAACATTATAGA--TTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACT 23982 || ||||| || | ||||| | | ||||| | || ||||||||| || || |||| Sbjct 412423 GTGACATTGTAAACCTTCTTGTTA--CCCAAGGCCACAAGCAATCTATCGGCAACGAACT 412480 Query 23983 CCATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAGTTTAACTGGAAGAGCCACA 24041 | | ||| ||||| ||||| |||||||| | ||| || |||| | || | Sbjct 412481 CGACGTATTGGCACATCAAGTCACAGTTCATTCCCAACAAGCTTG-CTGGCAAGGCATCG 412539 Query 24042 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT-ACTGTTTCTTC 24100 |||| |||||| |||||||| ||| || || || ||||| ||| || | || Sbjct 412540 GTAAAGTATTCTTTTTCAATAGTGACGGCCTCAGTAATAATCT-TCTCCACGATAGCTGG 412598 Query 24101 ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTC 24160 | ||| | || || |||| ||| || || || || ||| | ||| || Sbjct 412599 GTTTGGTCTGTTGTTCAAGTGAGAGAACAACAAGCAGGCAAAGTCAGTGTGCAAACCTTC 412658 Query 24161 GTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 24220 |||||| | ||| ||||||||||| ||||| || || ||||| | || | ||| || | Sbjct 412659 GTCTCTGCAAATCAATTCGTTGGAGAACGTAAGACCAGGCATCAAACCTCTCTTCTTCAA 412718 Query 24221 CCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAAT 24280 ||| || || || ||||| || ||||| |||||||| ||||| || || |||||||| | Sbjct 412719 CCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAATACCTTCGACAGCAGCAAAGGCCAC 412778 Query 24281 AAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTT 24337 | |||||| || | ||| ||| | | ||||| | ||||| |||||||| Sbjct 412779 CAATCTTTCGGCAAACAAGGCCTCGTCGTCTGCGATCCATCTCAAGGCCCACTCGGCCTT 412838 Query 24338 CTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATC 24397 ||| || | ||||| || | || ||||| || || | | ||| || ||| || Sbjct 412839 CTTCTTAATGCAAGGGATGTTTTCGATAGCGTTGAACAAAAAGTCAGCCTCTTTAGGGTC 412898 Query 24398 TTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 24457 ||| | || | || ||||| | | || ||||||| || |||||||| || || Sbjct 412899 TTTGATGTAGGAGTCGATCAACAAAGAGTAGGTTTCCGAGTGGATGTTTTCCATCATGAT 412958 Query 24458 TTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT-- 24515 || ||||||||||||||| | ||||| | ||||| || || | |||| ||||| Sbjct 412959 CTGGAATCCGTAGAAACATTTGGCCTCTGGGATCTGGACCTCAGCAGAAAA--GTTCTCC 413016 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 | || || ||||| || |||||||| || ||||| || ||||| || || Sbjct 413017 ACCAAGTTCTCATTGACAATTCCGTCCGAAGCAGCAAAGAAAGCCAACACTCTGGAGATG 413076 Query 24576 AAATATTTTTCGTCTGGTGTTAGT-------TTATTCCAATCATTGATATCTTTAGATAT 24628 || || | |||| ||| ||| || ||||| || ||||| ||||| || | Sbjct 413077 AAGAATCTCTCGT----TGTCAGTCATTCTGTTCTTCCAGTCGTTGATGTCTTTCGACAA 413132 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 || | ||||||| | ||||| || ||||| || |||||||| ||||| | ||| || || Sbjct 413133 GTCAATTTCTTCCGCAGTCCAGAAAGATGCTTCGGCCTTTTTGTACATTTGCCAAATCTC 413192 >seq28 Length=63775 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 54069 ||||| ||||| || ||||| || ||||| || | ||| || ||||| | || | || Sbjct 54197 CCACTTTCCGTTATTTTTCACCCGCTTCATGAATAAATCTGGGATCCACAAGGCAAAGAA 54256 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | ||||| | ||| ||| || || ||||||| ||| || || | |||| Sbjct 54257 CAAGTCTCTCGCTCTCAATTCATCAGGGCCATGATTCTTTCGAAGTTCAAGCACTTCCAT 54316 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 || || ||||| || || | ||| || | | | || || |||||||||||||| Sbjct 54317 GATGTCCCCGTGCCAAGGCTCGATGTAAATAGCAAATGCGCCCGGTCGTTTGTTTCCTCC 54376 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCATTGG 54248 |||||| | ||||| || |||||||| | ||| |||||||||||| |||| || || | Sbjct 54377 CTGATCGACATATCTTGCAGTGTTATTGAAGACTTTCAACATTGGAACTAAT-CCGTTTG 54435 Query 54249 ATGCACCATT 54258 | | ||||| Sbjct 54436 AGGTGCCATT 54445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721206659440