Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq13 297 2e-75 seq10 259 6e-64 seq28 111 2e-19 >seq13 Length=360411 Score = 297 bits (328), Expect = 2e-75 Identities = 1161/1817 (64%), Gaps = 45/1817 (2%) Strand=Plus/Minus Query 62085 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62144 |||||||| ||||| || | || ||||||||||||| ||||| || | || Sbjct 46576 TAGTACATACCCGTCTTCAATCCCTTCTTCCATCCGTAAAAGTGCATGGAAGTCAACTTA 46517 Query 62145 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62204 | | || ||| || ||||| |||| || || ||||| || || || | Sbjct 46516 CCCATAGTAGGTTCTCTGATGTGGATGTTCAACGACTGTGACTGATCAATAAACGCAGCT 46457 Query 62205 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACT 62264 ||||| |||||||| | ||||| ||| || | |||||||| | |||||||| | Sbjct 46456 CTGTCGGCAGCCATGTCAATGATATGCTTCTGAGAGATTTCCCACACGGTTTTATATAAA 46397 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGT---ATTCTGAATGGATCCACCATCTACCATAATC 62321 ||||| || || ||||| | |||| | |||||||||||| | | || || Sbjct 46396 CGCTTGATTTCGTCTGGGACATTTGGTAAAGACTGAATGGATCCGTTGTTGGCAATGATG 46337 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA--AACTC--TAAGGAGATG 62377 | ||||| || | |||||||| | | || || || || || | | | || Sbjct 46336 TTGTTCTTCATATTGTCATTCCAAA----TACCTAAGTCAACTAAGTCCTTCAACATGTG 46281 Query 62378 CGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATA 62437 |||||||| | ||||| || || | | ||||| | | |||||| || || || Sbjct 46280 TGGGTTAACAATCTGGAACTCGCCGGCAAGCACTCTTCTGGAGTAAATGTTGGATGTGTA 46221 Query 62438 CGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 ||||| | | || || || ||||| ||||||| ||| || || || ||||| || || Sbjct 46220 AGGTTCAAAGCATTCGTTGTTACCCAAGATTTGAGAAGTAGAGGCTGTTGGCATCGGAGC 46161 Query 62498 CACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATT 62557 || | ||| |||||| ||||||| | | | || | || | | ||||| | Sbjct 46160 AACAAGCAAAGAATTTCTGAGACCGTGTTTGGCCAAATTTTGCTTCAAAGTATCCCAGTC 46101 Query 62558 CCAAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAG-AATACCGTTA 62609 ||| | || || || | | ||| || || | ||| || || Sbjct 46100 CCACAACTCGGATGGCTTTCTGTCCCACAAGTCG-------TACTGCAACAATCCCTTTG 46048 Query 62610 CTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC 62669 | | | || ||| ||||||| |||||||| ||||||| || ||| || | | Sbjct 46047 ACGCAGGA-GAACCTTCATATGTCTCATATGGACCTTCCTCCTGAGCAAGCTCGATAGAT 45989 Query 62670 GCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCC 62729 || || | ||| | | ||||||||| || || |||| | || | |||| |||||| Sbjct 45988 GCTTCCACAGCAGCATGATAAATGGTCTCGAATATCTGAATGTTCAACTCTTTAGCTTCC 45929 Query 62730 GGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATA 62789 || || || || | | ||| || || || || || | |||||||| |||| | Sbjct 45928 TGGGAGTCGAAAGGCAATCTCAAGGACATGAATGCATCAGCAAGACCTTGAACTCCAAGA 45869 Query 62790 CCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATA 62849 | |||||||| | |||| |||| || || ||||| || ||| ||| |||| | Sbjct 45868 GCAATAGGTCTGTTTCTCATATTGGATCTTCTGGCTTCCTCAACAGGGTAAAAATTTCTG 45809 Query 62850 TCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62909 || || ||| | || | ||||| || || ||| ||| || | || || ||| Sbjct 45808 TCAATGATTCTGTTCAAGTTTCTAGTAACAACCTTGGTCACCTCGTGCAACTTATCAAAG 45749 Query 62910 TC--------AAATCGCC-CATCTATTACAAACA-TGTT--CAATGCAACAGATGCCAGA 62957 | || | | ||||| | ||| | || ||| |||| || |||| Sbjct 45748 TTGTACCAGGAACTAGATGCATCTTTCTCAACGAATGAAGGCAAAGCAATGGAGGCCAAG 45689 Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 ||||| || || || || | | | || | | |||||| || | ||| Sbjct 45688 TTACAGACAGCAACTTCTTCTGGGGAAGAGTACTCGACAATCTCACAACACAAGTTAGAT 45629 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | |||||| | || || || | ||| ||| | || |||||||| |||||||| || | Sbjct 45628 GATTTGATAATACCCAAGTTCTTTTGGTTAGTTTTCTTGTTACAAGCATCCTTGTACAAC 45569 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63137 ||||||||||| || || ||| | || | ||| | || | | ||| | | ||||| Sbjct 45568 ATGAATGGAGTTCCTGTCTCAGTTTGCGCTTCCAAGATAGAGTACCAAAGCTTTTGAGCC 45509 Query 63138 TTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCG 63197 || | | ||| | | | |||||| || || ||||| ||| ||||| Sbjct 45508 TTGACGGTGGATCTTCCACGGCCTTCTCTCTCATACTTTTCGTACAAAGCTTCAAACTCA 45449 Query 63198 TCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCG 63257 || || | |||| |||| | |||| ||||| ||| | | ||| | ||| || ||| Sbjct 45448 TCGCCGTAGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAACAAAGTCCAGTCACCG 45389 Query 63258 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTT 63317 | | | |||| ||||| || | ||| || ||||||||||| || | |||||| Sbjct 45388 TTTTGTTCAACTCTCTTCATGAACAAATCCGGGATCCAAAGAGCAGGGAACAAATCTCTG 45329 Query 63318 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 63377 | |||| ||| || || || |||||| ||| |||| ||| | | ||| |||| | Sbjct 45328 GCTCTAATTTCTTCCTTACCGTGGTTCTTTCTAATGTCGATGAAGTCGAAAATGTCAGCA 45269 Query 63378 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63437 ||||| || |||||||| || || | | | || |||| ||||| || || || || | Sbjct 45268 TGCCAAGGCTCCAAGTAAATCGCAAAAGCGCCTGGCCTCTTGTTGCCACCTTGGTCGACA 45209 Query 63438 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTG 63497 || | || ||||| || |||| | || ||||||||| |||||||| || |||| || Sbjct 45208 TAACGTGCTGTGTTGTTGAAAACACGCACCATTGGAATGATACCGTTAGAAGTACCGTTA 45149 Query 63498 GTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 ||||| | || || | ||| | | || || || | ||| || || || Sbjct 45148 GTACCTGCAATGTAAGCGCCAGTACTTCTGATGTTGTGGATGTGCAAACCAATACCACCA 45089 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || | || || ||||| |||||| ||||| ||||| || || || || ||| ||| Sbjct 45088 GCACTCTTGGAAATTAAAGCGCATGTCTTTAATGTGTCGTAAATACCGTCGATGGAGTCA 45029 Query 63618 TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAAT 63677 || ||||| || || ||||| ||||||||| | | | || || ||||| || Sbjct 45028 TCCTTCATGGCAACAAGGAAACAAGACGACATTTGGGGGCTTGGGGTACCTGCATTGAAC 44969 Query 63678 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63737 ||||| |||||| |||| ||||| || | | || | | |||||| || || || | Sbjct 44968 AAGGTTGGAGAACCGTGAGTAAAGTATCTCTGGGACATCAAATTGTAAGTTTCGATCACA 44909 Query 63738 GAGTCTATATCCCATT--GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 || || | |||| ||||| || || || || | ||| | || ||||| |||| Sbjct 44908 CGTTCAATGT--CATTCCCGTGAATACCAACCGCAACTCTCATGATCAAATGCTGTGGTC 44851 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 ||||| ||| || ||| | | | | |||||| ||| |||||||||| || ||||| | Sbjct 44850 TTTCAGCAACCTTCCCGTTGACTCTGAGCAAGTATGATCTTTCCAAAGTCTTGAAACCGA 44791 Query 63856 AATAGTTGTA--TGAAA 63870 | |||||||| ||||| Sbjct 44790 AGTAGTTGTAGTTGAAA 44774 >seq10 Length=432243 Score = 259 bits (286), Expect = 6e-64 Identities = 581/865 (67%), Gaps = 22/865 (3%) Strand=Plus/Plus Query 33312 TTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTG 33371 || |||||||| || || |||||| |||| || || || ||||| || || || || ||| Sbjct 412363 TTCTCGAAAAAGTTGGTCTTTCCTGCCAAGGAAATGTTCTCCATAAAGTCGAATGGGTTG 412422 Query 33372 GTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCT 33431 || |||||||||| || || ||||| | || ||||||||| || ||||| || Sbjct 412423 GTGACATTGTAAACCTTCTTGTTACCCAAGGCCACAAGCAATCTATCGGCAACGAACTCG 412482 Query 33432 ATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTA 33491 | ||| ||||| ||||| |||||||| | | | |||| | || | ||| Sbjct 412483 ACGTATTGGCACATCAAGTCACAGTTCATTCCCAACAAGCTTGCTGGCAAGGCATCGGTA 412542 Query 33492 AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA-ACGGTTTCTTCACT 33550 | |||||| |||||| | || || | || ||||| ||| ||| | || | Sbjct 412543 AAGTATTCTTTTTCAATAGTGACGGCCTCAGTAATAATCT-TCTCCACGATAGCTGGGTT 412601 Query 33551 CGGTG-GATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGT 33609 ||| | ||| || || |||| ||| || || || || ||||| ||| |||| Sbjct 412602 TGGTCTGTTGTTC-AAGTGAGAGAACAACAAGCAGGCAAAGTCAGTGTGCAAACCTTCGT 412660 Query 33610 CTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCC 33669 |||| | ||| |||||||| || ||||| || || ||||| | || | ||| || | || Sbjct 412661 CTCTGCAAATCAATTCGTTGGAGAACGTAAGACCAGGCATCAAACCTCTCTTCTTCAACC 412720 Query 33670 AAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAA 33729 | || || || || || || || || ||||| || ||||| || ||||||||||| | | Sbjct 412721 AGAAGATAGAGGCAAACGAGCCAGAGAAGAAAATACCTTCGACAGCAGCAAAGGCCACCA 412780 Query 33730 GTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCT 33786 ||| || || | ||| ||| | | ||||| | ||||| |||||||||| Sbjct 412781 ATCTTTCGGCAAACAAGGCCTCGTCGTCTGCGATCCATCTCAAGGCCCACTCGGCCTTCT 412840 Query 33787 TTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTT 33846 | || | ||||| || |||| || || || || | | ||| || ||| |||| Sbjct 412841 TCTTAATGCAAGGGATGTTTTCGATAGCGTTGAACAAAAAGTCAGCCTCTTTAGGGTCTT 412900 Query 33847 TAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCT 33906 | | || | |||||||| | | || ||||||| || |||||||| || |||| Sbjct 412901 TGATGTAGGAGTCGATCAACAAAGAGTAGGTTTCCGAGTGGATGTTTTCCATCATGATCT 412960 Query 33907 GAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GC 33964 | ||||||||||||||| | ||||| | ||||| || || | | |||| ||||| | Sbjct 412961 GGAATCCGTAGAAACATTTGGCCTCTGGGATCTGGACCTCAGCAGAAAA--GTTCTCCAC 413018 Query 33965 TAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || || ||||| || ||||| || || ||||| || ||||| || || || Sbjct 413019 CAAGTTCTCATTGACAATTCCGTCCGAAGCAGCAAAGAAAGCCAACACTCTGGAGATGAA 413078 Query 34025 ATATTTTTCGTCTGGTGTTAGT-------TTATTCCAATCATTGATATCTTTAGATATAT 34077 || | |||| ||| ||| || ||||| || ||||| ||||| || | | Sbjct 413079 GAATCTCTCGT----TGTCAGTCATTCTGTTCTTCCAGTCGTTGATGTCTTTCGACAAGT 413134 Query 34078 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 34137 | | ||||||| | ||||| || ||||| || |||||||| ||||| | ||| || || | Sbjct 413135 CAATTTCTTCCGCAGTCCAGAAAGATGCTTCGGCCTTTTTGTACATTTGCCAAATCTCGT 413194 Query 34138 GATATTGGATTGGGAAAATAACAAA 34162 || | ||| ||||| | ||||| Sbjct 413195 TGTACTTGATAGGGAACAACACAAA 413219 >seq28 Length=63775 Score = 111 bits (122), Expect = 2e-19 Identities = 176/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 ||||| ||||| || ||||| || ||||| || | ||| || ||||| | || | || Sbjct 54197 CCACTTTCCGTTATTTTTCACCCGCTTCATGAATAAATCTGGGATCCACAAGGCAAAGAA 54256 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 | ||||| | ||| ||| || || ||||||| ||| || || | |||| Sbjct 54257 CAAGTCTCTCGCTCTCAATTCATCAGGGCCATGATTCTTTCGAAGTTCAAGCACTTCCAT 54316 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 || || ||||| || || | ||| || || | | || || |||||||||||||| Sbjct 54317 GATGTCCCCGTGCCAAGGCTCGATGTAAATAGCAAATGCGCCCGGTCGTTTGTTTCCTCC 54376 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA-TAATACCGTTTG 63486 |||||| | ||||| || |||||||| | ||| |||||||||||| |||| ||||||| Sbjct 54377 CTGATCGACATATCTTGCAGTGTTATTGAAGACTTTCAACATTGGAACTAAT-CCGTTTG 54435 Query 63487 ATATACCATT 63496 | | ||||| Sbjct 54436 AGGTGCCATT 54445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817182745840