Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13 246 3e-60 seq10 158 1e-33 >seq13 Length=360411 Score = 246 bits (272), Expect = 3e-60 Identities = 1116/1749 (64%), Gaps = 35/1749 (2%) Strand=Plus/Minus Query 36826 GTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACTG 36885 ||||||| || ||||| || || || | ||| ||||||||||||| ||||| Sbjct 46585 GTTCTCAAGTAGTACATACCCGTCTTCAATCCCTTCTTCCATCCGTAAAAGTGCATGGAA 46526 Query 36886 GTCAGTTTTGCGTATGTAGGATTATCT-ATATATATTGTCATTGATTGACTTTGATCTAT 36944 |||| || | ||||| || ||| || | || ||| || || ||||| || Sbjct 46525 GTCAACTTACCCATAGTAGG-TTCTCTGATGTGGATGTTCAACGACTGTGACTGATCAAT 46467 Query 36945 AAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGT 37004 ||||||| |||||||||| ||||| || | ||| || ||||| || ||||| || || Sbjct 46466 AAACGCAGCTCTGTCGGCAGCCATGTCAATGATATGCTTCTGAGAGATTTCCCACACGGT 46407 Query 37005 TTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATAGAACCATTATG 37061 |||||||| | || || | ||||| | || | ||| ||||| || || || | Sbjct 46406 TTTATATAAACGCTTGATTTCGTCTGGGACATTTGGTAAAGACTGAATGGATCCGTTGTT 46347 Query 37062 TAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTCTC 37119 | || | ||||| || | | |||||| ||| | | | | | ||| || || Sbjct 46346 GGCAATGATGTTGTTCTTCATATTGTCATTCCAAATACCTA-AGTCAACTAAGTCCT-TC 46289 Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 || | |||||| || |||| ||| || || || | | |||||||| | || || ||| Sbjct 46288 AACATGTGTGGGTTAACAATCTGGAACTCGCCGGCAAGCACTCTTCTGGAGTAAATGTTG 46229 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 || || ||||||| | | || || |||| || |||||||| ||||| || || ||| Sbjct 46228 GATGTGTAAGGTTCAAAGCATTCGTTGTTACCCAAGATTTGAGAAGTAGAGGCTGTTGGC 46169 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATT--AATTCTCTTTTTTAGTT 37297 || || || | || | |||||| | || ||| | |||| | || ||| Sbjct 46168 ATCGGAGCAACAAGCAAAGAATTTCTGAGACCGTGTTTGGCCAAATTTTGCTTCAAAGT- 46110 Query 37298 CATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAG-AATACCT 37356 || ||| ||||| || || | ||| || | ||||| || || || | ||| ||| Sbjct 46109 -ATCCCAGTCCCACAACTCGGATGGCTTTCTGTCCCACAAGTCGTACTGCAACAATCCCT 46051 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 || ||| |||||| | | |||||||||||| || || | | ||| || ||| | Sbjct 46050 TTGA-CGCAGGAGAACCTTCATATGTCTCATATGGACCTTCCTCCTGAGCAAGCTCGATA 45992 Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 | ||| | || |||| ||| || || ||||| || || || || || ||| ||| Sbjct 45991 GATGCTTCCACAGCAGCATGATAAATGGTCTCGAATATCTGAATGTTCAACTCTTTAGCT 45932 Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536 || | | ||||| | | | ||| | || || ||||||| | ||| ||||| || Sbjct 45931 TCCTGGGAGTCGAAAGGCAATCTCAAGGACATGAATGCATCAGCAAGACCTTGAACTCCA 45872 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 | | | || ||||| | | || |||| ||||| | ||| || || ||| |||| Sbjct 45871 AGAGCAATAGGTCTGTTTCTCATATTGGATCTTCTGGCTTCCTCAACAGGGTAAAAATTT 45812 Query 37597 ATATCTATTATTTTATTTAGATTT---TTAAC-----TAGTATTTTCGTAATTATTCTC- 37647 | || || ||| | || | ||| |||| | || |||| || || Sbjct 45811 CTGTCAATGATTCTGTTCAAGTTTCTAGTAACAACCTTGGTCACCTCGTGCAACTTATCA 45752 Query 37648 AACTTGT----CGAACATAAATACGTTATTATTAACAAATTTACTCAACGAAATAGATCC 37703 || |||| |||| || || | | || | ||| ||| | ||| | ||| || | Sbjct 45751 AAGTTGTACCAGGAAC-TAGATGCATCTTTCTCAACGAATGAAGGCAAAGCAATGGAGGC 45693 Query 37704 TAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATT 37763 | ||||| ||||||||||| ||| | | | | | |||||| ||| | || Sbjct 45692 CAAGTTACAGACAGCAACTTCTTCTGGGGAAGAGTACTCGACAATCTCACAACACAAGTT 45633 Query 37764 ACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATA 37823 | ||| | || | ||||| || |||| || | ||| || ||||||| ||| || || Sbjct 45632 AGATGATTTGATAATACCCAAGTTCTTTTGGTTAGTTTTCTTGTTACAAGCATCCTTGTA 45573 Query 37824 TAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT 37883 | || | || |||||| || |||| || || | ||||| | ||| || ||| | Sbjct 45572 CAACATGAATGGAGTTCCTGTCTCAGTTTGCGCTTCCAAGATAGAGTACCA-AAGCTTTT 45514 Query 37884 -TGCTTTAACGATCG--CTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTT 37940 || || ||| | | ||| | ||| | | || || | | || || | Sbjct 45513 GAGCCTTGACGGTGGATCTTCCACGGCCTTC--TCTCTCATACTTTTCGTACAAAGCTTC 45456 Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| || | ||||| || || ||| ||| |||| | | | || ||| Sbjct 45455 AAACTCATCGCCGTAGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAACAAAGTCCA 45396 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 || | | || ||| || | | ||| || ||||| || | ||| | |||| || || Sbjct 45395 GTCACCGTTTTGTTCAACTCTCTTCATGAACAAATCCGGGATCCAAAGAGCAGGGAACAA 45336 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 |||| ||| |||| |||||| || || |||||||| | | | || ||||| || Sbjct 45335 ATCTCTGGCTCTAATTTCTTCCTTACCGTGGTTCTTTCTAATGTCGATGAAGTCGAAAAT 45276 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||||| ||||| || || | ||||||| | || ||||| || || | || || || Sbjct 45275 GTCAGCATGCCAAGGCTCCAAGTAAATCGCAAAAGCGCCTGGCCTCTTGTTGCCACCTTG 45216 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 | | ||| | ||||||| || | | | | ||| || | ||||| ||||| | Sbjct 45215 GTCGACATAACGTGCTGTGTTGTTGAAAACACGCACCATTGGAATGATACCGTTAGAAGT 45156 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 ||||| |||| | || |||| || || || || || || ||| || || Sbjct 45155 ACCGTTAGTACCTGCAATGTAAGCGCCAGTACTTCTGATGTTGTGGATGTGCAAACCAAT 45096 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||| ||| || || |||||||||||| ||||| || || | ||||| || || Sbjct 45095 ACCACCAGCACTCTTGGAAATTAAAGCGCATGTCTTTAATGTGTCGTAAATACCGTCGAT 45036 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||||||||| || | | | |||||| |||||||| || ||| || || || Sbjct 45035 GGAGTCATCCTTCATGGCAACAAGGAAACAAGACGACATTTGGGGGCTTGGGGTACCTGC 44976 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 || || || || ||||| | || | || || | | |||| |||| || ||||| Sbjct 44975 ATTGAACAAGGTTGGAGAACCGTGAGTAAAGTATCTCTGGGACATCAAATTGTAAGTTTC 44916 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || ||| || || ||| ||||||||||| | | || ||||| | || ||| || Sbjct 44915 GATCACACGTTCAATGTCATTCCCGTGAATACCAACCGCAACTCTCATGATCAAATGCTG 44856 Query 38541 TGGTCTTTC 38549 ||||||||| Sbjct 44855 TGGTCTTTC 44847 >seq10 Length=432243 Score = 158 bits (174), Expect = 1e-33 Identities = 390/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || || ||||| ||| || |||||||||||||| | || | ||| || || Sbjct 412624 AACAACAAGCAGGCAAAGTCAGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTGGAG 412683 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || | || |||||||| |||| || || | ||| || |||| ||||| || ||| Sbjct 412684 AACGTAAGACCAGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCA 412743 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTG 11797 || ||||| || || || ||||| ||||| || || | |||||| || | | ||| | Sbjct 412744 GAGAAGAAAATACCTTCGACAGCAGCAAAGGCCACCAATCTTTCGGCAAACAAGGCCTCG 412803 Query 11798 TTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCT 11857 | | | |||||| | |||||| || || ||||| || | ||| || |||| Sbjct 412804 TCGTCTGCGATCCATCTCAAGGCCCACTCGGCCTTCTTCTTAATGCAAGGGATGTTTTCG 412863 Query 11858 ATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAA 11917 |||||||| || ||| ||| || ||| | | || | || || || ||| Sbjct 412864 ATAGCGTTGAACAAAAAGTCAGCCTCTTTAGGGTCTTTGATGTAGGAGTCGATCAACAAA 412923 Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 || |||| || || || |||||||| || || ||||| ||||||||| ||| Sbjct 412924 GAGTAGGTTTCCGAGTGGATGTTTTCCATCATGATCTGGAATCCGTAGAAACATTTGGCC 412983 Query 11978 TCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 |||| ||| || || || |||| | ||| | || |||||||| ||||| || || Sbjct 412984 TCTGGGATCTGGACCTCAGCAGAAAAGTTCTCCACCAAGTTCTCATTGACAATTCCGTCC 413043 Query 12038 CTAGATGCAAAAAATGCTAGTA-TATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT-- 12094 || ||||| || || | | | || || ||| || | |||| | ||| | | Sbjct 413044 GAAGCAGCAAAGAAAGCCAACACTCTG-GAGATGAAGAATCTCTCGTTGTCAGTCATTCT 413102 Query 12095 -TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 || | ||| || | | ||||| || || || | |||||| | ||||| ||| ||| Sbjct 413103 GTTCTTCCAGTCGTTGATGTCTTTCGACAAGTCAATTTCTTCCGCAGTCCAGAAAGATGC 413162 Query 12154 CACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 | | | ||| ||||||| ||| || || | ||||| |||||||| Sbjct 413163 TTCGGCCTTTTTGTACATTTGCCAAATCTCGTTGTACTTGATAGGGAA 413210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524489602320