Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 1e-15 seq14 89.7 5e-13 >seq10 Length=432243 Score = 98.7 bits (108), Expect = 1e-15 Identities = 343/523 (66%), Gaps = 18/523 (3%) Strand=Plus/Minus Query 50327 TCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGCATTGAAATGGA 50386 |||||||| |||| || || | || | || |||| ||| ||||| |||| ||||| Sbjct 412873 TCAACGCTATCGAAAACATCCCTTGCATTAAGAAGAAGGCCGAGTGGGCCTTGAGATGGA 412814 Query 50387 CTaaaaacaaaaaa-CTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCATAGTTGAAGGT 50445 | || | | | | |||| ||||| | || ||||| ||||| || |||||| Sbjct 412813 TCGCAGACGACGAGGCCTTGTTTG-CCGAAAGATTGGTGGCCTTTGCTGCTGTCGAAGGT 412755 Query 50446 GTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGGCATAATGCCC 50505 | || || || || ||||| | || || | | || | ||| | ||||| Sbjct 412754 ATTTTCTTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCT 412695 Query 50506 GGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGACTTTGCG 50565 || || ||||| |||||| ||||||| | |||||||| ||||||| |||||||| Sbjct 412694 GGTCTTACGTTCTCCAACGAATTGATTTGCAGAGACGAAGGTTTGCACACTGACTTTGCC 412635 Query 50566 TGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTGGACATG 50625 || |||| | | | | | | || | | | || || | | || |||| | | Sbjct 412634 TGCTTGTTGTTCTCT---CACTTGAACAACAGAC---CAAACCCAGCTATCGTGGAGAAG 412581 Query 50626 TTCAAA---GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCA 50682 | | || |||||| || |||||||| | || || || || || || | Sbjct 412580 ATTATTACTGAGGCCGTCACTATTGAAAAAGAATACTTTACCGATGCCTTGCCAGCAAGC 412521 Query 50683 TTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTG 50742 |||||||| |||||| ||| |||||||| | ||| | ||||| ||||| || |||||| Sbjct 412520 TTGTTGGGAATGAACTGTGACTTGATGTGCCAATACGTCGAGTTCGTTGCCGATAGATTG 412461 Query 50743 -TTGTTGCAGCTGGGACAACC-GAAATACTATAATG-CACGTAACCCCTTTCCGTTTATG 50799 |||| || || || ||| ||| || |||| ||| ||||| || |||||| Sbjct 412460 CTTGTGGC--CTTGGGTAACAAGAAGGTTTACAATGTCACC-AACCCATTCGACTTTATG 412404 Query 50800 AATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGA 50841 | ||||| || |||| || || || ||||||||||| |||| Sbjct 412403 GAGAACATTTCCTTGGCAGGAAAGACCAACTTTTTCGAGAAGA 412361 >seq14 Length=288459 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || || || ||||| |||||||| ||| | Sbjct 84847 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 84906 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| ||||||||| | |||| | |||||| || ||||| Sbjct 84907 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGAGGA 84966 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || || || || | | || | ||||| | | ||| ||| Sbjct 84967 ATTCCCTCCTTATCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGATTCAACT 85026 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| ||||| || || |||||||| Sbjct 85027 TCCAATGTGATGGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCAT 85073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014064102960