Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq14 141 7e-29 seq1 138 8e-28 >seq14 Length=288459 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || || | ||||| || ||||| |||||||| ||| Sbjct 84163 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 84222 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| ||||||| ||||| || |||||| | ||||| | ||| ||||| |||| Sbjct 84223 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGA 84282 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||| ||| | || || || ||| ||| || Sbjct 84283 ATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACT 84342 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| ||||| |||| ||| || || || ||||||||| Sbjct 84343 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCATA 84390 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || || | ||||| || ||||| |||||||| ||| Sbjct 84391 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 84450 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| ||||||| ||||| || |||||| | ||||| | ||| ||||| ||| Sbjct 84451 AAAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGA 84510 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| |||||| || || | || ||||| || | || || Sbjct 84511 ATTCCTTCCTTGTCTTGAATTTTAGATTTAACGTTGTCAATGGTGTCAGAAGACTCAACT 84570 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| ||||| |||| ||| || || || ||||||||| Sbjct 84571 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCATA 84618 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| ||||| || || | ||| || || || || |||||||| || Sbjct 84619 CCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTCTGAATGTTGTAGTCAGAC 84678 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| ||||||| ||||| || |||||| | ||||| | ||| ||||| ||| Sbjct 84679 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGG 84738 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||| ||| | || || || ||| | ||| || Sbjct 84739 ATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCAATTGTGTCGGAAGATTCAACT 84798 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| ||||| |||| ||| || || |||||||||||| Sbjct 84799 TCTAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTGCATA 84846 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || || | ||||| || || || |||||||| ||| Sbjct 83935 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGATTCCTTCTGAATGTTGTAGTCGGAC 83994 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| ||||| || |||||| | ||||| | ||| ||||| |||| Sbjct 83995 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGA 84054 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| || ||| ||| ||| | || || || ||| ||| || Sbjct 84055 ATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACT 84114 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| ||||| |||| ||| || || || ||||||||| Sbjct 84115 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCATA 84162 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || || | ||||| || ||||| |||||||| ||| Sbjct 84847 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 84906 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| ||||||| ||||| || ||||| | ||||| | ||| ||||| ||| Sbjct 84907 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGAGGA 84966 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || || || || ||| ||| || | || || || ||| | ||| || Sbjct 84967 ATTCCCTCCTTATCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGATTCAACT 85026 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||| ||||| ||||| |||||||| Sbjct 85027 TCCAATGTGATGGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCAT 85073 >seq1 Length=1779567 Score = 138 bits (152), Expect = 8e-28 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| || || || || | ||| || || ||||| |||||||| ||| Sbjct 999704 CCACCTCTCAATCTCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 999645 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| |||| || ||||| || || || | ||||| | ||| ||||| |||| Sbjct 999644 AAGGTTCTGCCGTCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCAGGTGGA 999585 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| ||| | || ||||| || ||| || Sbjct 999584 ATACCTTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATGGTGTCAGAGGATTCGACC 999525 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT 15365 || ||||||||||| |||||||||| ||| || ||||| |||||||||| Sbjct 999524 TCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACAAAGATTTGCATAT 999476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178966054873