Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10 158 3e-33 seq14 127 5e-24 >seq10 Length=432243 Score = 158 bits (174), Expect = 3e-33 Identities = 385/567 (68%), Gaps = 26/567 (5%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| |||||| || ||||| ||||||| |||||| | || |||| | ||| Sbjct 413180 ATGTACAAAAAGGCCGAAGCATCTTTCTGGACTGCGGAAGAAATTGACTTGTCGAAAGAC 413121 Query 268802 TTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGA-AGATTTAT-ATCTT-ATATTCTT 268858 | | || ||||| || || | || || || ||||| | |||| | | | || Sbjct 413120 ATCAACGACTGGAAGAACAGAATGACTGAC-AACGAGAGATTCTTCATCTCCAGAGTGTT 413062 Query 268859 GCGTTT-TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCA 268917 | ||| ||||| | | || || || || || || || | || ||||| || | | Sbjct 413061 GGCTTTCTTTGCTGCTTCGGACGGAATTGTCAATGAGAACTTGGTGGAGAACTTTTCTGC 413002 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 ||||| ||||| || || |||| |||||| |||||||||||||| || ||||| || Sbjct 413001 TGAGGTCCAGATCCCAGAGGCCAAATGTTTCTACGGATTCCAGATCATGATGGAAAACAT 412942 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 || || || | ||| | | || || || | || || | || | ||||| Sbjct 412941 CCACTCGGAAACCTACTCTTTGTTGATCGACTCCTACATCAAAGAC-----CCTAAAGAG 412887 Query 269038 AA-GACTATTTTCTTC-----TAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAAT 269090 |||| |||| ||| ||| || ||| || || | | || || | || | Sbjct 412886 GCTGACT-TTTTGTTCAACGCTATCGAAAAC-ATCCCTTGCATTAAGAAGAAGGCCGAGT 412829 Query 269091 GGGCTCTGAAATGGAT---AAACGATAGCGCGCCTTAC--GGAGAAAGGTTAGTTGCTTT 269145 |||| ||| |||||| | |||| | | ||||| | ||||| || || || || Sbjct 412828 GGGCCTTGAGATGGATCGCAGACGAC-GAG-GCCTTGTTTGCCGAAAGATTGGTGGCCTT 412771 Query 269146 TGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAA 269205 ||| ||||| |||||||| ||||| || || || |||||| ||||||| ||||||||||| Sbjct 412770 TGCTGCTGTCGAAGGTATTTTCTTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAA 412711 Query 269206 AAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTT 269265 ||||| | ||||| || | || ||||| ||||||||||| |||| ||||||||||| Sbjct 412710 GAGAGGTTTGATGCCTGGTCTTACGTTCTCCAACGAATTGATTTGCAGAGACGAAGGTTT 412651 Query 269266 ACACTGCGACTTCGCTTGTTTATTATT 269292 ||| ||||| || || || || || Sbjct 412650 GCACACTGACTTTGCCTGCTTGTTGTT 412624 >seq14 Length=288459 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || |||||||| |||||||| || |||||||| | |||||||||||||| | ||| Sbjct 84643 TGCAAGGTAGATTCCTTCTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGC 84702 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || | || || || ||||| || ||||| || || || || ||||| Sbjct 84703 TTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGGATCTTG 84762 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || ||| || ||| || |||| || || ||||||||||| Sbjct 84763 GACTTAACATTGTCAATTGTGTCGGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTC 84822 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 84823 AAAGTCTTAACGAAAATTTGCAT 84845 Score = 123 bits (136), Expect = 6e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || || || || || ||||| || | |||||||||||||| | ||| Sbjct 84871 TGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAATTGC 84930 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | || || || |||||||| ||||| || ||||| || ||||| Sbjct 84931 TTACCAGCAAAAATCAATCTTTGCTGGTCAGGAGGAATTCCCTCCTTATCTTGGATCTTG 84990 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || || || || | || ||| || ||| || || | ||| || ||||| || || Sbjct 84991 GACTTAACGTTGTCGATAGTGTCGGAAGATTCAACTTCCAATGTGATGGTCTTGCCGGTC 85050 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 | ||||| ||||| || |||||| ||| Sbjct 85051 AAGGTTTTAACAAAGATTTGCATTATGT 85078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397618128524