Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq14 131 1e-25 seq13 91.5 1e-13 seq10 86.0 5e-12 >seq1 Length=1779567 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| ||||| || ||||| || | || | || || ||| || | Sbjct 999478 ATGCAAATCTTTGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAGGTCGAATCCTCT 999537 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || ||||||||||| ||||||||||| || || Sbjct 999538 GACACCATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAG 999597 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || || || ||||| | | ||| | ||||| |||||| Sbjct 999598 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGACGGCAGAACCTTGTCCGACTACAAC 999657 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | || || || ||| ||||| | || ||| Sbjct 999658 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGAGATTGAGAGGTGGT 999705 >seq14 Length=288459 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||||| |||||||| || ||||| | ||||| ||| | || Sbjct 84161 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCGTCC 84102 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| |||||||| || || Sbjct 84101 GACACTATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAG 84042 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || ||| | | || | ||||| |||||| Sbjct 84041 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCCGACTACAAC 83982 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || |||||||| | || || || ||| ||||| | || || Sbjct 83981 ATTCAGAAGGAATCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 83935 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||||| |||||||| || ||||| | ||||| ||| | || Sbjct 84389 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCGTCC 84330 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| |||||||| || || Sbjct 84329 GACACTATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAG 84270 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || || | | || | ||||| |||||| Sbjct 84269 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAAC 84210 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || || ||| ||||| | || ||| Sbjct 84209 ATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 84162 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| ||||| || ||||| || ||||| | ||||| ||| | || Sbjct 84845 ATGCAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 84786 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || |||||||||||||| || ||||| || || Sbjct 84785 GACACAATTGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATCCCACCTGACCAG 84726 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || || | ||| | || || |||||| Sbjct 84725 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAAC 84666 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | || || |||||| ||||| | || ||| Sbjct 84665 ATTCAGAAGGAATCTACCTTGCACTTGGTTTTGAGATTGAGAGGTGGT 84618 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||||| |||||||| || ||||| | ||||| || | | Sbjct 84617 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAGTCTTCT 84558 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| ||||||||||||||||| || ||||| || || || Sbjct 84557 GACACCATTGACAACGTTAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAG 84498 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || || || || || | | || | ||||| |||||| Sbjct 84497 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAAC 84438 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || || ||| ||||| | || ||| Sbjct 84437 ATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 84390 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| || ||||| || || |||| | ||||| ||| | || Sbjct 85073 ATGCAAATCTTTGTTAAAACCTTGACCGGCAAGACCATCACATTGGAAGTTGAATCTTCC 85014 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || ||||| |||||||| ||||| || || || Sbjct 85013 GACACTATCGACAACGTTAAGTCCAAGATCCAAGATAAGGAGGGAATTCCTCCTGACCAG 84954 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || || || || || || | ||| | ||||| |||||| Sbjct 84953 CAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAAC 84894 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || ||||| | || || || ||| ||||| | || ||| Sbjct 84893 ATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGGT 84846 >seq13 Length=360411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 530/831 (64%), Gaps = 43/831 (5%) Strand=Plus/Minus Query 129415 GCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGG 129474 ||||||| || || |||||| || ||| || | |||||||| |||| || | Sbjct 45988 GCTTCCACAGCAGCATGATAAATGGTCTCGAATATCTGAATGTTCAACTCTTTAGCTTCC 45929 Query 129475 TCGCTTTCGTACGGCATACGCAA---CATGGCAAATGTGTCGGCCAAACCTTGAATACCC 129531 | | ||| | |||| | ||| |||| |||| || || | |||||||| || Sbjct 45928 TGGGAGTCGAAAGGCAATCTCAAGGACATG---AATGCATCAGCAAGACCTTGAACTCCA 45872 Query 129532 ACACCGATGGGTCGATGTTT-TC-TATTGGATTTTTGTGC--CGACAACAAGGGATAGTA 129587 | | | || |||| ||||| || |||||||| || || | ||||| || | | | Sbjct 45871 AGAGCAATAGGTC--TGTTTCTCATATTGGATCTTCTGGCTTCCTCAACAGGGTAAA--A 45816 Query 129588 GTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACAT 129647 || |||| || ||| |||| || || | |||| || || || | | ||| | Sbjct 45815 ATTTCTGTCAATGATTCTGTTCAAGTTTCTAGTAACAACCTTGGTCACCTCGTGCAACTT 45756 Query 129648 TTCAAAATTGTACTCGC--CTA----CATCGATGTCGACAAATTGATTGACACAAATCGA 129701 ||||| |||||| | ||| |||| | || || ||| | | | ||| || Sbjct 45755 ATCAAAGTTGTACCAGGAACTAGATGCATCTTTCTCAACGAATGAAGGCAAAGCAATGGA 45696 Query 129702 GGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAA 129761 |||||| || ||||| ||| ||| | | | | |||||||||||| || ||||| Sbjct 45695 GGCCAAGTTACAGACAGCAACTTCTTCTGGGGAAGAGTACTCGACAATCTCACAACACAA 45636 Query 129762 ATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTT 129821 ||| ||| || | ||||| | |||||| ||| ||||| |||| |||||||| || Sbjct 45635 GTTAGATGATTTGATAATACCCAAGTTCTTTTGGTTAGTTTTCTTGTTACAAGCATCCTT 45576 Query 129822 GTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC--AAG 129879 ||||| |||| | || || || || || ||||| ||| ||| | | | || ||| Sbjct 45575 GTACAACATGAATGGAGTTCCTGTCTCAGTTTGCGCTTC--CAA-GATAGAGTACCAAAG 45519 Query 129880 -TCTCGAGCCTTGA---TCTGTCTTACAAATTTGCCACATTTCTCGTATGCCACATACAG 129935 | | ||||||||| | |||| || ||| | |||| || | |||| Sbjct 45518 CTTTTGAGCCTTGACGGTGGATCTTCCA---CGGCCTTCTCTCTCATACTTTTCGTACAA 45462 Query 129936 TTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGC--AAC--GGCGATTCACGCGGACACA 129991 |||||| || ||||| || || ||| ||| || | |||| ||| | | Sbjct 45461 AGCTTCAAACTCATCGCCGTAGAC---ATC-AGCCAAACCAGGAGCTTCATTTGGAGAAA 45406 Query 129992 TCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGG 130051 |||| |||| || | ||| |||| ||||| |||||||| || | ||| || | Sbjct 45405 ACAAAGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAACAAATCCGGGATCCAAAGAG 45346 Query 130052 CGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGA 130111 | |||||||||| ||| | | || || ||| ||| | | | || | || Sbjct 45345 CAGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACCGTGGTTCTTTCTAATGTCGATGA 45286 Query 130112 AATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCC---CTTCCGTT 130168 | ||| ||||||| || ||||| || || | ||||| || | ||||| | || | Sbjct 45285 AGTCGAAAATGTCAGCATGCCAAGGCTCCAAGTAAATCGCAAAAGCGCCTGGCCTCTTGT 45226 Query 130169 TGCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTG 130219 |||| |||||||| || | || | | |||||| | || |||| ||||| Sbjct 45225 TGCCACCTTGGTCGACATAACGTGCTGTGTTGTTGAAAACACGCACCATTG 45175 >seq10 Length=432243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 117080 TGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGG 117139 ||||||||| |||||||| || ||| ||||| | || || | | |||| | ||| Sbjct 412764 TGTCGAAGGTATTTTCTTCTCTGGCTCGTTTGCCTCTATCTTCTGGTTGAAGAAGAGAGG 412705 Query 117140 TCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACAC 117199 | | ||||| ||||| ||||| ||||||||| || | | ||||||||||| ||||| Sbjct 412704 TTTGATGCCTGGTCTTACGTTCTCCAACGAATTGATTTGCAGAGACGAAGGTTTGCACAC 412645 Query 117200 CGATTTTGCGTGCATGT 117216 || ||||| ||| ||| Sbjct 412644 TGACTTTGCCTGCTTGT 412628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727728881945