Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 199 4e-46 seq14 100 3e-16 seq1 89.7 5e-13 >seq10 Length=432243 Score = 199 bits (220), Expect = 4e-46 Identities = 586/894 (66%), Gaps = 17/894 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| ||||| || || ||||| ||||||||||| | |||||| || || |||||| Sbjct 412363 TTCTCGAAAAAGTTGGTCTTTCCTGCCAAGGAAATGTTCTCCATAAAGTCGAATGGGTTG 412422 Query 132685 GCTGTGTTGTAG---TGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | ||||| | |||| | || | ||| | || |||| || ||||| |||||| Sbjct 412423 GTGACATTGTAAACCTTCTTGTTACCCA--AGGCC-ACAAGCAATCTATCGGCAACGAAC 412479 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCG 132801 |||| |||||| |||| || || || | ||||| || | | |||| || ||| Sbjct 412480 TCGACGTATTGGCACATCAAGTCACAGTTCATTCCCAACAAGCTTGCTGGCAAGGCATCG 412539 Query 132802 GTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCG 132861 || | | || || || | ||| || || || | || | | ||| || | | Sbjct 412540 GTAAAGTATTCTTTTTCAATAGTGACGGCCTCAGTAATAATCTTCTCCACGATAGCTGGG 412599 Query 132862 CTCGGCC-GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 | || | |||| | || || ||||| |||||| |||||||| ||||| || || Sbjct 412600 TTTGGTCTGTTGTTC-AAGTGAGAGAACAACAAGCAGGCAAAGTCAGTGTGCAAACCTTC 412658 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| ||| |||| | ||||||| ||| || | || ||||| | || | || || | Sbjct 412659 GTCTCTGCAAATCAATTCGTTGGAGAACGTAAGACCAGGCATCAAACCTCTCTTCTTCAA 412718 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || | ||| || ||| || ||||| | || ||||| || || || ||||| Sbjct 412719 CCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAATACCTTCGACAGCAGCAAAGGCCAC 412778 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | ||| | ||| ||| || | | |||||||| | || ||||| |||||||| Sbjct 412779 CAATCTTTCGGCAAACAAGGCCTCGTCGTCTGCGATCCATCTCAAGGCCCACTCGGCCTT 412838 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | || | ||| || || ||||||| ||||| |||||| | ||||| | | Sbjct 412839 CTTCTTAATGCAAGGGATGTTTTCGATAGCGTTGAACAAAAAGTCAGCCTCTTTAGGGTC 412898 Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 | ||||| |||||| | || || |||||||||| | ||| ||||| ||| Sbjct 412899 TTTGATGTAGGAGTCGATCAACAAAGAGTAGGTTTCCGAGTGGATGTTTTCCATCATGAT 412958 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACG--CTC 133277 || || ||||| || || ||||| | ||| || || ||| |||| | ||| Sbjct 412959 CTGGAATCCGTAGAAACATTTGGCCTCTGGGATCTGGACCTC---AGCAGAAAAGTTCTC 413015 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||| || || ||||| || ||||| || || || || |||| ||| ||| Sbjct 413016 CACCAAGTTCTCATTGACAATTCCGTCCGAAGCAGCAAAGAAAGCCAACACTCTGGAGAT 413075 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | ||||||||| ||| | || ||||||| |||| || |||| ||| Sbjct 413076 GAAGAATCTCTCGTTGTCAGTCATTCTGTTCTTCCAGTCGTTGATGTCTTTCGACAAGTC 413135 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 | || || | ||||| || || || ||||| ||||||||||| ||| || || Sbjct 413136 AATTTCTTCCGCAGTCCAGAAAGATGCTTCGGCCTTTTTGTACATTTGCCAAATCTCGTT 413195 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || | || || || | |||||| ||||| ||| || ||||| ||||| Sbjct 413196 GTACTTGATAGGGAACAACACAAAACGGCGCTTGTTCTCCACCAACAATGGCTC 413249 >seq14 Length=288459 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| | || ||||| |||||||| | || || || | | Sbjct 85074 AATGCAAATCTTTGTTAAAACCTTGACCGGCAAGACCATCACATTGGAAGTTGAATCTTC 85015 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | |||| |||| || |||| || || ||||||||||| | |||| Sbjct 85014 CGACACTATCGACAACG-TTAAGTCCAAGATCCAAGATAAGGAGGGAATTCCTCCTGACC 84956 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | | |||| || || || || |||| |||| | ||| | |||||||| Sbjct 84955 AGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACA 84896 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || |||| |||||| || | |||||||| || Sbjct 84895 ACATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 84847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || || ||| | | Sbjct 84617 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAGTCTTCT 84558 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| ||||| ||||| | ||||| || |||||||| | ||||| Sbjct 84557 GACACCATTGACAACG-TTAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 84499 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||| || || || |||| |||| | || | ||||||||| Sbjct 84498 GCAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAA 84439 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || |||| |||||| || | |||||||| || Sbjct 84438 CATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 84391 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || || || | || Sbjct 84389 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCGTCC 84330 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| || |||| ||||| ||||||||||| | ||||| Sbjct 84329 GACACTATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAG 84270 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | ||| || || || |||| |||| | || | |||||||||| Sbjct 84269 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAAC 84210 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || |||| |||||| || | |||||||| || Sbjct 84209 ATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 84163 >seq1 Length=1779567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || || ||||| ||| | || ||||| || | Sbjct 999478 ATGCAAATCTTTGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAGGTCGAATCCTCT 999537 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || |||| ||||| || || ||||| | ||||| Sbjct 999538 GACACCATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAG 999597 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | || || || || |||| |||| | ||| | |||||||||| Sbjct 999598 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGACGGCAGAACCTTGTCCGACTACAAC 999657 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || |||| |||||| || | |||||||| || Sbjct 999658 ATCCAAAAGGAATCTACCTTGCACTTGGTGTTGAGATTGAGAGGTGG 999704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172468635520