Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 233 2e-56 seq13 203 4e-47 >seq10 Length=432243 Score = 233 bits (258), Expect = 2e-56 Identities = 569/853 (67%), Gaps = 7/853 (1%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || || || || | |||||| || || || || || || ||||| | || || || Sbjct 412342 TTCTGGTAGTCCGAAACTCTCTTCTCGAAAAAGTTGGTCTTTCCTGCCAAGGAAATGTTC 412401 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || ||||| || | ||||| || | || ||| || || | | || Sbjct 412402 TCCATAAAGTCGAATGGGTTGGTGACATTGTAAACCTTCTTGTTACCCAAGGCCACAAGC 412461 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || || || | | ||| | ||||| ||||| |||||||| | || Sbjct 412462 AATCTATCGGCAACGAACTCGACGTATTGGCACATCAAGTCACAGTTCATTCCCAACAAG 412521 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | | || | ||||| |||| |||||| ||| ||| | || ||||| | ||||| Sbjct 412522 CTTGCTGGCAAGGCATCGGTAAAGTATTCTTTTTCAATAGTGACGGCCTCAGTAATAATC 412581 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || || || || || || | ||| || |||| ||| || ||||| Sbjct 412582 TTCTCCACGATAGCTGGGTTTGGTCTGTTGTTCAAG-TGAGAGAACAACAAGCAGGCAAA 412640 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| || | || |||||||| | |||||||| || || || || | ||||||||| Sbjct 412641 GTCAGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTGGAGAACGTAAGACCAGGCAT 412700 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || ||||| || || |||||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 412701 CAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAATACCTTC 412760 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATT 19147 || || ||||| || || | |||||| || ||| | || || | | |||||| Sbjct 412761 GACAGCAGCAAAGGCCACCAATCTTTCGGCA-AACAAGGCCTCGTCGTCTGCGATCCATC 412819 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 ||| ||||| || |||||||| || | || || || | || |||| || || | | Sbjct 412820 TCAAGGCCCACTCGGCCTTCTTCTTAATGCAAGGGATGTTTTCGATAGCGTTGAACAAAA 412879 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | ||| | | ||||| | || | || ||||| ||| ||| |||| || | Sbjct 412880 AGTCAGCCTCTTTAGGGTCTTTGATGTAGGAGTCGATCAACAAAGAGTAGGTTTCCGAGT 412939 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 | || ||||| || ||||| |||||||| |||||| | || |||| ||||| || | Sbjct 412940 GGATGTTTTCCATCATGATCTGGAATCCGTAGAAACATTTGGCCTCTGGGATCTGGACCT 412999 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 || | |||| | || ||||| || ||||| || ||||| || ||| ||||| || | Sbjct 413000 CAGCAGAAAAGTTCTCCACCAAGTTCTCATTGACAATTCCGTCCGAAGCAGCAAAGAAAG 413059 Query 19388 CTAATAC-ATGTTTAATAA-AATGT-TTTTCATCTGAGGTTAATGTATTCCAATCATTAA 19444 | || || || | || ||| | | | || | || | ||||| || || | Sbjct 413060 CCAACACTCTGGAGATGAAGAATCTCTCGTTGTCAGTCATTCTGTTCTTCCAGTCGTTGA 413119 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 | ||||| || || || | |||||| | ||||| ||||| || || || ||||| |||| Sbjct 413120 TGTCTTTCGACAAGTCAATTTCTTCCGCAGTCCAGAAAGATGCTTCGGCCTTTTTGTACA 413179 Query 19505 TGTTCCATATATC 19517 | | ||| || || Sbjct 413180 TTTGCCAAATCTC 413192 >seq13 Length=360411 Score = 203 bits (224), Expect = 4e-47 Identities = 567/863 (66%), Gaps = 20/863 (2%) Strand=Plus/Minus Query 47956 ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCA 48015 |||||||| ||||||| || | || ||| | |||||||| || |||||||| | || Sbjct 45627 ATTTGATAATACCCAAGTTCTTTTGGTTAGTTTTCTTGTTACAAGCATCCTTGTACAACA 45568 Query 48016 TAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075 | || || ||||| || || | || | ||| | |||||| | ||||| | ||||| Sbjct 45567 TGAATGGAGTTCCTGTCTCAGTTTGCGCTTCCAAGATAGAGTACCAAAGCTTTTGAGCCT 45508 Query 48076 TTATAACAGCTCTA-----GCTTTAT-TATCATGTTCGTATTTAGTATATAACTTCTCAA 48129 | | | ||| || || | | |||| | ||| ||| | | |||| || Sbjct 45507 TGACGGTGGATCTTCCACGGCCTTCTCTCTCATACT----TTTCGTACAAAGCTTC--AA 45454 Query 48130 ATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189 | ||||| || || |||| | | || |||||| |||||| ||| | | ||| | ||| | Sbjct 45453 ACTCATCGCCGTAGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAACAAAGTCCAGT 45394 Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAAT 48249 | | | | || ||||| |||| || | ||| || ||||||||||| || |||| Sbjct 45393 CACCGTTTTGTTCAACTCTCTTCATGAACAAATCCGGGATCCAAAGAGCAGGGAACAAAT 45334 Query 48250 CCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATAT 48309 | || | ||| | |||||| || || ||| || ||| || | ||||| | || | Sbjct 45333 CTCTGGCTCTAATTTCTTCCTTACCGTGGTTCTTTCTAATGTCGATGAAGTCGAAAATGT 45274 Query 48310 CAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGAT 48369 |||||||||| || || || || || || | | ||||| | || || || ||||| | Sbjct 45273 CAGCATGCCAAGGCTCCAAGTAAATCGCAAAAGCGCCTGGCCTCTTGTTGCCACCTTGGT 45214 Query 48370 CTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATAC 48429 | | ||| | || || ||||| |||| | | |||||| | ||||| || || ||| Sbjct 45213 CGACATAACGTGCTGTGTTGTTGAAAACACGCACCATTGGAATGATACCGTTAGAAGTAC 45154 Query 48430 CATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATA 48488 | || || || | ||| ||| ||| || ||| || || || || || ||| ||| Sbjct 45153 CGTTAGTACCTGCAATGTAAGCGCCAGTACTTCTGATGTTGTGGATGTGCAA-ACCAATA 45095 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 ||||| || | || || |||| ||| || || | || || ||||| || || || Sbjct 45094 CCACCAGCACTCTTGGAAATTAAAGCGCATGTCTTTAATGTGTCGTAAATACCGTCGATG 45035 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||| |||| | || |||||| |||||||| || || |||| | Sbjct 45034 GAGTCATCCTTCATGGCAACAAGGAAACAAGACGACATTTGGGGGCTTGGGGTACCTGCA 44975 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 || || || |||||||| | ||| |||| || ||| || | ||| || || ||||| Sbjct 44974 TTGAACAAGGTTGGAGAACCGTGAGTAAAGTATCTCTGGGACATCAAATTGTAAGTTTCG 44915 Query 48669 ATAACAGAATCTATATCCCATT--GATGTATACCTATAGATACACGCATTAACATATATT 48726 || ||| || || | |||| || ||||| | | || | ||| | || || | Sbjct 44914 ATCACACGTTCAATGT--CATTCCCGTGAATACCAACCGCAACTCTCATGATCAAATGCT 44857 Query 48727 GAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAA 48786 | ||||||||| ||| || || | | | | | |||||| ||||||| || || | Sbjct 44856 GTGGTCTTTCAGCAACCTTCCCGTTGACTCTGAGCAAGTATGATCTTTCCAAAGTCTTGA 44797 Query 48787 AACCAAAATAGTTGTA--TGAAA 48807 |||| || |||||||| ||||| Sbjct 44796 AACCGAAGTAGTTGTAGTTGAAA 44774 Score = 107 bits (118), Expect = 2e-18 Identities = 306/467 (66%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || |||||||||| || | | | || | || |||| || || |||||||| ||| Sbjct 46621 TCAACAGTAAACTGGATCGCAGCAGCAGCAGCTTGCGTTCTCAAGTAGTACATACCCGTC 46562 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || || || ||||||| || || ||||| ||| || ||| | |||||||| Sbjct 46561 TTCAATCCCTTCTTCCATCCGTAAAAGTGCATGGAAGTCAACTTACCCATAGTAGGTTCT 46502 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 || || || || | || || |||||||||||| ||| |||| || || ||||| Sbjct 46501 CTGATGTGGATGTTCAACGACTGTGACTGATCAATAAACGCAGCTCTGTCGGCAGCCATG 46442 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 || | ||| | | || | || ||||| || |||||||| | | || || || ||| Sbjct 46441 TCAATGATATGCTTCTGAGAGATTTCCCACACGGTTTTATATAAACGCTTGATTTCGTCT 46382 Query 47217 GGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgtttttta-at-- 47270 |||| ||| | | ||||| ||||| ||| | || || ||||| || | || Sbjct 46381 GGGACATTTGGTAAAGACTGAATGGATCCGTTGTTGGCAATGATGTTGTTCTTCATATTG 46322 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330 ||||| ||||| | ||| ||| || || | || || |||||||| || Sbjct 46321 TCATT---CCAAATACCTAAGTCAACTAAGTCCTTCAACATGTGTGGGTTAACAATCTGG 46265 Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 || || || | || ||||| | | || || || ||| || ||||| | |||| Sbjct 46264 AACTCGCCGGCAAGCACTCTTCTGGAGTAAATGTTGGATGTGTAAGGTTCAAAGCATTCG 46205 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAAC 47437 || || || || ||||||| ||| || ||||| ||||| | ||||| Sbjct 46204 TTGTTACCCAAGATTTGAGAAGTAGAGGCTGTTGGCATCGGAGCAAC 46158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108427602920