Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 176 3e-38 seq7 136 3e-26 seq5 100 2e-15 seq14 98.7 6e-15 >seq6 Length=705841 Score = 176 bits (194), Expect = 3e-38 Identities = 547/838 (65%), Gaps = 13/838 (2%) Strand=Plus/Plus Query 475477 AGCATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTAC 475536 ||| || ||| | | |||||||| ||||| | || ||| || | | || ||| || | Sbjct 387844 AGCCTTGAGAAGATTGAGAACTGCGTGTGAGAGAGCCAAGAGAACCTTGTCCTCTTCTGC 387903 Query 475537 TCAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTAC 475596 ||||| || | || | || ||| | || || || ||||| | | ||| || || Sbjct 387904 CCAAACCTCTATCGAGATCGACTCTTTGTTCGAGGGTATTGACTTCTACACTTCCATCAC 387963 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 || |||| ||| || || | ||| || | || ||| || | || || || || Sbjct 387964 CAGAGCTAGATTCGAGGAATTGTGTCAAGACTTGTTCAGATCCACCTTGGACCCAGTCGA 388023 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGG 475716 | || | ||||| | || | ||||| || || || | || ||||| ||||| || Sbjct 388024 GAAGGTGTTGAGAGACGCCAAGGTCGACAAGTCGCAGGTTGACGAGATTGTCCTTGTTGG 388083 Query 475717 AGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAA 475776 ||||| || ||||||||||| | | | || |||| | || || ||||| | Sbjct 388084 TGGTTCTACCAGAATTCCAAAGGTTCAAAAGTTGGTTTCTGACTTCTTCAACGGTAAGGA 388143 Query 475777 GTTAAATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCA 475834 | ||| |||| | || || ||||| |||||||| || || || ||||| ||||| Sbjct 388144 GCCAAAC--AAGTCCATCAACCCAGATGAGGCTGTTGCTTACGGTGCCGCTGTTCAAGCT 388201 Query 475835 GCTATTTTATCAGGT--CAATCAGACGAGAAACTAAATAATATTGTACTTGTTG-ACGTA 475891 ||||| || || ||| || | | | | ||| || | | ||| |||||| | || Sbjct 388202 GCTATCTTGTCTGGTGACACTTCTTCTA-AGACTCAAGACT--TGTTGTTGTTGGATGTT 388258 Query 475892 ACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGA 475951 ||||| | || || ||| |||| || | || || || ||||| || | ||| ||| Sbjct 388259 GCTCCATTGTCCTTGGGTATTGAGACCGCCGGTGGTATCATGACCAAGTTGATTCCAAGA 388318 Query 475952 AATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACA 476011 || | | |||||| ||| || || | || ||||| || |||| || ||| || Sbjct 388319 AACTCCACCATCCCAACCAAGAAGTCTGAGACTTTCTCCACCTACGCTGACAACCAACCA 388378 Query 476012 ACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTT 476071 ||| || ||| ||||||||||||||||| ||||| || || ||| | Sbjct 388379 GGTGTGTTGATTCAAGTCTTTGAAGGTGAAAGAGCCAAGACTAAGGACAACAACTTGTTG 388438 Query 476072 GGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTT 476131 || | ||| | | ||||| || || ||||| ||||| ||||| |||||||||||| Sbjct 388439 GGTAAGTTTGAGTTGTCTGGTATCCCACCAGCTCCAAGAGGTGTTCCACAAATTGAAGTT 388498 Query 476132 ACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAAC 476191 || ||||| |||||||| || ||||| | || || |||| | || || || | Sbjct 388499 ACCTTTGACATTGATGCCAACGGTATCTTGAACGTCTCTGCCTTGGAGAAGGGTACTGGT 388558 Query 476192 AAGAGTAAAAATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAA 476251 |||| | |||| || || || || ||| | |||||||| | | ||| | ||| | Sbjct 388559 AAGACTCAAAAGATTACCATCACCAACGACAAGGGTAGATTGTCCAAGGAAGACATTGAG 388618 Query 476252 CGTATGGTTGATGAAGCCAAAGAGTTTGAAGAAGCTGATAACAAGAGAAAAGCTGCTA 476309 | |||||| ||| ||| ||| || ||| || || || ||| ||||||||| Sbjct 388619 AGAATGGTTTCTGAGGCC-GAGAAGTTCAAGGAG--GAGGACGAGAAGGAAGCTGCTA 388673 Score = 174 bits (192), Expect = 1e-37 Identities = 406/598 (68%), Gaps = 21/598 (4%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG--TTTGGCAAA-ATGGTAAAG 474389 ||||||||||||| || ||||| ||| ||||| ||| |||| ||| || || | Sbjct 387090 TTGGTATTGATTTGGGTACTACCTACTCCTGTGTGGCTCACTTTGCCAACGATCGT---G 387146 Query 474390 TAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTG 474449 | ||||| |||||||| ||||||||||| ||||| || || || | |||| |||| || | Sbjct 387147 TGGAAATTATTGCCAACGACCAAGGTAACAGAACCACTCCTTCCTTTGTTGCTTTCACCG 387206 Query 474450 AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATA 474509 | |||||| | ||||| ||||||||||| | |||||||| || || | || | Sbjct 387207 ACACTGAAAGATTGATTGGTGATGCTGCTAAGAACCAAGCTGCTATGAACCCAGCCAACA 387266 Query 474510 CTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTG 474569 || | || || ||||| ||| | |||||| | || || ||| | || ||| || Sbjct 387267 CTGTCTTCGACGCTAAGAGACTTATTGGTAGAAAGTTCACTGACGCTGAAGTGCAAGGTG 387326 Query 474570 ATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGAAGC 474627 | || || | ||||| ||||| || | | ||||| ||| | || || Sbjct 387327 ACATCAAGCACTTCCCTTTCAAGGTCATTGACAAGGCCGGTAAGCCACAAATCCAGGTTG 387386 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | | || | ||||| || || || | || ||| || ||||||| ||| | || | Sbjct 387387 AGTTCAAG--GGTGAGACCAAGGTCTTCACTCCAGAAGAAGTTTCTTCTATGATCTTGAC 387444 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATT 474745 ||| ||||| | || || ||| || | |||||| | | || | || || || | Sbjct 387445 CAAGATGAAGGAGACTGCTGAG-TC-TTTCTTGGGTACCACCGTTTCCGACGCTGTTGTC 387502 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||||||||| || || || || |||||| | ||||| || || ||||| || ||| Sbjct 387503 ACTGTTCCAGCTTACTTCAACGACTCTCAAAGACAAGCTACCAAGGATGCTGGTTTGATT 387562 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||| | || ||| | | || || || || ||||| || || || ||||||| ||| Sbjct 387563 GCTGGTTTGAACGTTATGAGAATCATCAACGAGCCAACCGCTGCTGCCATTGCTTACGGT 387622 Query 474866 CTTGATAAGAATTCTGA-CA-AAGAAGTAAATGTTTTAATCTTTGATT---GTGGAGG 474918 | || ||||| ||||| || ||||| || ||||| || || || | ||||||| Sbjct 387623 TTGGACAAGAAGTCTGAGCACGAGAAG--AACGTTTTGATTTTCGACTTGGGTGGAGG 387678 >seq7 Length=699681 Score = 136 bits (150), Expect = 3e-26 Identities = 401/606 (66%), Gaps = 23/606 (4%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||||| || ||||| ||| |||||| ||| || | || | Sbjct 3888 TGCTATCGGTATCGATTTGGGTACTACCTACTCTTGTGTTGCTACTTACGACTCTGCT-- 3831 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| ||||| || || || ||||| ||| || || || | ||| |||| || Sbjct 3830 -GTCGAAATCATTGCTAACGAACAGGGTAACAGAGTTACTCCTTCCTTCGTTGCTTTCAC 3772 Query 474448 TGAAACTGA--ACATCTT-ATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGT 474504 | |||| | | || ||||| || |||||||| | || ||||| | || || Sbjct 3771 CG---CTGAGGAAAGATTGATTGGTGACGCTGCTAAGAACCAGGCTGCTTTGAACCCAAA 3715 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || ||| |||| |||||||| | |||||||||||| ||| || || ||||||| Sbjct 3714 GAACACTGTTTTCGATGCTAAGCGTTTGATTGGTCGTGCTTTCGACGACGAGTCTGTCCA 3655 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA 474624 | || || |||||||| ||||| || || ||||| |||| || || Sbjct 3654 AAAGGACATCAAGACCTGGCCTTTCAAGGTCATCAACTCCAACGGTAACCCATTGATTGA 3595 Query 474625 AG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 || | ||| | || || || || || || || || ||||||| || |||||| Sbjct 3594 AGTTGAGTACTTGGAG--GAGACCAAGACTTTCTCCCCTCAAGAAATTTCCTCTATGGTT 3537 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAG 474740 || |||| ||||| | | || ||| || | |||| ||||| || | || | Sbjct 3536 TTGACCAAGATGAAGGAGATTGCTGAGGCCA-AGATTGG-TAAGAAGGTTGAGAAGGCTG 3479 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | ||||||||||| || ||||| || ||||||||||||| || || || || || Sbjct 3478 TTGTCACTGTTCCAGCTTACTTTAACGACGCTCAACGTCAAGCCACCAAGGACGCTGGTG 3419 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| ||| | || || || | || || || || ||||| || ||||| |||||| Sbjct 3418 CCATTGCTGGTTTGAACGTCTTGAGAATCATCAACGAGCCAACTGCCGCCGCTATTGCTT 3359 Query 474861 ATGGTCT---TGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GTG 474914 | ||| | || | || || || || || | | ||||| ||||| || | ||| Sbjct 3358 ACGGTTTGGGTGCTGGTAAGTCCGAGAAGGAGAGACACGTTTTGATCTTCGACTTGGGTG 3299 Query 474915 GAGGTA 474920 |||||| Sbjct 3298 GAGGTA 3293 >seq5 Length=724248 Score = 100 bits (110), Expect = 2e-15 Identities = 250/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Minus Query 475796 CCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCA 475855 ||||||||||| ||||| || || |||||||||||||||| | || | || ||| Sbjct 169433 CCTGATGAAGCAGTTGCTTACGGTGCTGCTGTCCAAGCAGGTGTTCTTTCCGGT------ 169380 Query 475856 GACGAGAAACTAAATAATATTGTACTTGTT-GACGTAACTCCACTTTCATTAGGTCTTGA 475914 || ||| | ||| | ||||| ||||| || || | || | | || ||| |||| Sbjct 169379 GAAGAGGGTGTCAATGACATTGT-TTTGTTGGATGTCAACCCCTTAACTTTGGGTATTGA 169321 Query 475915 AACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAA 475974 || ||| || | ||||||| | ||| ||||||| ||| |||| ||| ||| || Sbjct 169320 GACCACTGGTGGTGTCATGACTACCTTGATTAACAGAAACACTGCTATTCCAACCAAGAA 169261 Query 475975 ATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGA 476034 || || | || || ||| | || || || ||||||| ||||| ||| || Sbjct 169260 GTCCCAAATTTTCTCTACTGCGGCCGACAACCAGCCAACTGTGTTGATCCAGGTCTACGA 169201 Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG-AACTTTTAATCTTGA-AGGT 476092 |||||| ||| || ||| || || ||| | || || || || |||| ||| Sbjct 169200 AGGTGAGAGAGCTTTGGTTAAGGACAACAACTTGTTGGGTAAGTTCGAA--TTGACCGGT 169143 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || || || ||||| ||||| || || ||||| || || || || | ||||| ||| Sbjct 169142 ATCCCACCAGCTCCAAGAGGTGTCCCACAAATCGAGGTCACCTTCTCCTTGGATGCCAAT 169083 Query 476153 GGTATTCTTAATGT 476166 |||||| | || || Sbjct 169082 GGTATTTTGAAGGT 169069 >seq14 Length=288459 Score = 98.7 bits (108), Expect = 6e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 480608 AGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 ||||||| ||||| | |||||| ||||| || || | | ||| || || |||||||| Sbjct 84453 AGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGAAT 84512 Query 480668 TCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTT 480726 |||||||||||||||||| || ||| || ||||| || |||| | | || || Sbjct 84513 TCCTTCCTTGTCTTGAATTTTAGATTTAACGTTGTCAATGGTGTCAGAAGACTCAA-CTT 84571 Query 480727 CAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || || || |||||||| | |||||||||||| ||||| Sbjct 84572 CTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTG 84614 Score = 95.1 bits (104), Expect = 8e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480608 AGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 ||||||| |||||| | |||||| ||||| || || | | ||| || ||||| ||||| Sbjct 83997 AGTTCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAAT 84056 Query 480668 TCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTC 480727 ||| ||||||||||| ||||| || ||| || ||||| || | | | ||| Sbjct 84057 TCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTC 84116 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || |||||||| | |||||||||||| ||||| Sbjct 84117 TAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTG 84158 Score = 89.7 bits (98), Expect = 3e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 480608 AGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAAT 480667 ||||||| ||||| | |||||| ||||| || || | | ||| || ||||| ||||| Sbjct 84225 AGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAAT 84284 Query 480668 TCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTC 480727 ||| ||||||||||| ||||| || ||| || ||||| || | | | ||| Sbjct 84285 TCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTC 84344 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || |||||||| | |||||||||||| ||||| Sbjct 84345 TAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTG 84386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176926572844