Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14 149 1e-30 seq1 114 2e-20 seq10 111 3e-19 >seq14 Length=288459 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || ||||| | ||| || || || || || Sbjct 84160 ATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCG 84219 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| |||||||| |||||||| || || ||||| || ||||||||| Sbjct 84220 GACAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGT 84279 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || || || ||||| ||||| || |||||||| Sbjct 84280 GGAATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCA 84339 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| ||||| ||||| || || || |||| ||| || ||||| Sbjct 84340 ACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84389 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| | || || || || || ||||| | || || ||| || || || || Sbjct 83935 CCACCTCTCAATCTCAACACCAAGTGCAAAGTGGATTCCTTCTGAATGTTGTAGTCGGAC 83994 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || |||||||| |||||||| || || ||||| || ||||||||||| Sbjct 83995 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGA 84054 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| || || ||||| || || || ||||| ||||| || |||||||| ||| Sbjct 84055 ATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACT 84114 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| ||||| ||||| || || || |||| ||| || ||||| Sbjct 84115 TCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84161 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || ||||| | ||| || || || || || Sbjct 84388 ATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCG 84447 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| |||||||| |||||||| || || ||||| || ||||| || Sbjct 84448 GACAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGA 84507 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| |||||| ||| || || || || || || || || Sbjct 84508 GGAATTCCTTCCTTGTCTTGAATTTTAGATTTAACGTTGTCAATGGTGTCAGAAGACTCA 84567 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| ||||| ||||| || || || |||| ||| || ||||| Sbjct 84568 ACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84617 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || || |||| || || ||| || || || Sbjct 84616 ATACCACCTCTCAATCTCAAAACCAAGTGCAAGGTAGATTCCTTCTGAATGTTGTAGTCA 84675 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| |||||||| |||||||| || || ||||| || ||||||||| Sbjct 84676 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGT 84735 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || || || ||||| || || || || ||||| Sbjct 84736 GGGATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGTCAATTGTGTCGGAAGATTCA 84795 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| ||||| |||||||| || || |||| ||| || ||||| Sbjct 84796 ACTTCTAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAAATTTGCAT 84845 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || ||||| | ||| || || || || || Sbjct 84844 ATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCG 84903 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| |||||||| |||||||||||||| ||||| || |||||||| Sbjct 84904 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGA 84963 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || || || || || ||||| || || ||||| Sbjct 84964 GGAATTCCCTCCTTATCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGATTCA 85023 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || ||||| || || || || ||||||| || || |||||| Sbjct 85024 ACTTCCAATGTGATGGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCATT 85074 >seq1 Length=1779567 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || || |||| || || || || Sbjct 999713 TTCTTACCACCACCTCTCAATCTCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTG 999654 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || || | || |||| |||||||| ||||| ||||| || ||||| || ||| Sbjct 999653 TAGTCGGACAAGGTTCTGCCGTCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGG 999594 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 999593 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTAACATTGTCGATGGTGTCAGAG 999534 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || | |||||||| ||||| || || || |||| || || ||||| Sbjct 999533 GATTCGACCTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACAAAGATTTGCAT 999478 >seq10 Length=432243 Score = 111 bits (122), Expect = 3e-19 Identities = 353/543 (65%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 || ||||| || |||||| | || ||||||||||| || |||||| | || || || Sbjct 412342 TTCTGGTAGTCCGAAACTCTCTTCTCGAAAAAGTTGGTCTTTCCTGCCAAGGAAATGTTC 412401 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 | |||||| || ||||| || || ||| ||| || | | || | | | || Sbjct 412402 TCCATAAAGTCGAATGGGTTGGTGACATTGTAAACCTTCT-TGTTACCCAAGGCCACAAG 412460 Query 38952 -AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||||| || || || || ||||| |||| || ||||| ||||| ||||| || Sbjct 412461 CAATCTATCGGCAACGAACTCGACGTATTGGCACATCAAGTCACAGTTCATTCCCAACAA 412520 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | ||| || ||||| || |||||||||| || || || | |||| || Sbjct 412521 GCTTGCTGGCAAGGCATCGGTAAAGTATTCTTTTTCAATAGTGACGGCCTCAGTAATAAT 412580 Query 39071 cataattatattattt---tttgataatttatatttaatatgattcgcatataGTAAACA 39127 | | | || | |||| | || | | | ||| | | | || || Sbjct 412581 CTTCTCCACGATAGCTGGGTTTGGTCTGTTGT---TCAAGTGA---GAGAACAACAAGCA 412634 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||||| || || || ||||||||||| || | || ||||| || || || | || Sbjct 412635 GGCAAAGTCAGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTGGAGAACGTAAGACC 412694 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 ||||| || |||||||| || | ||| || || || ||||| | ||| ||||| || Sbjct 412695 AGGCATCAAACCTCTCTTCTTCAACCAGAAGATAGAGGCAAACGAGCCAGAGAAGAAAAT 412754 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 ||| || ||| ||||| || | | |||| | |||||| | || ||| || Sbjct 412755 ACCTTCGACAGCAGCAAAGGCCACCAATCTTTCGGCAAACAAGGCCTCGTCGTCTGCGAT 412814 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| | | |||||| || || || || || || |||| || ||||| ||||| || || Sbjct 412815 CCATCTCAAGGCCCACTCGGCCTTCTTCTTAATGCAAGGGATGTTTTCGATAGCGTTGAA 412874 Query 39368 TAA 39370 || Sbjct 412875 CAA 412877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135400347400