Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13 136 1e-26 seq1 102 2e-16 seq2 87.8 5e-12 >seq13 Length=360411 Score = 136 bits (150), Expect = 1e-26 Identities = 563/882 (64%), Gaps = 21/882 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || ||||||||||| |||| |||||| ||||| | || || ||||| ||||| Sbjct 45659 GTACTCGACAATCTCACAACACAAGTTAGATGATTTGATAATACCCAAGTTCTTTTGGTT 45600 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || ||| ||||||||||||||||||| | ||| |||| ||||||||||| | || || Sbjct 45599 AGTTTTCTTGTTACAAGCATCCTTGTACAACATGAATGGAGTTCCTGTCTCAGTTTGCGC 45540 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATT-AATTTGCTTGTTGTATCTGCCTTCCG 155808 |||| || ||| || | | || || | || | || | | |||||| Sbjct 45539 TTCCAAGATAGAGTACCAAAGCTTTTGAGCCTTGACGGTGGATCTTCCA-CGGCCTTCTC 45481 Query 155809 ACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG 155866 |||||| |||| || | ||| ||| | || || ||||| |||| || ||||| Sbjct 45480 TCTCATACTTTTCGTACAAAGC-TTC-AAACTCATCGCCGTAGACATCAGCCAAACCAGG 45423 Query 155867 GCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT------ACACGCTCCAT 155920 | || || |||||| | ||| | |||| || || | || ||| Sbjct 45422 AGCTTCATTTGGAGAAAACAAAGTCCA------GTCACCGTTTTGTTCAACTCTCTTCAT 45369 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||||| |||| ||| | || || || | || || | || Sbjct 45368 GAACAAATCCGGGATCCAAAGAGCAGGGAACAAATCTCTGGCTCTAATTTCTTCCTTACC 45309 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| | | || | ||| || ||| |||| ||| ||||||| || || Sbjct 45308 GTGGTTCTTTCTAATGTCGATGAAGTCGAAAATGTCAGCATGCCAAGGCTCCAAGTAAAT 45249 Query 156041 AGCAAAACTACCATTCCTC---TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| || |||| |||||||| || || ||||| || || || || ||||| Sbjct 45248 CGCAAAAGCGCCTGGCCTCTTGTTGCCACCTTGGTCGACATAACGTGCTGTGTTGTTGAA 45189 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 |||| | ||| ||||| ||||| || ||||| || || || || ||| | | || Sbjct 45188 AACACGCACCATTGGAATGATACCGTTAGAAGTACCGTTAGTACCTGCAATGTAAGCGCC 45129 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGC 156217 || | | || || || || | ||||||||||| | | || |||||| ||| Sbjct 45128 AGTACTTCTGATGTTGTGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATTAAAGC 45069 Query 156218 GCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATA 156277 |||| ||||| || | | ||||||| || || || ||||| | ||| | | || | Sbjct 45068 GCATGTCTTTAATGTGTCGTAAATACCGTCGATGGAGTCATCCTTCATGGCAACAAGGAA 45009 Query 156278 GCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAAT 156337 || || | ||| || | ||| || || || ||||| | || || | | ||| | Sbjct 45008 ACAAGACGACATTTGGGGGCTTGGGGTACCTGCATTGAACAAGGTTGGAGAACCGTGAGT 44949 Query 156338 AAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTG 156397 ||| || | | ||||| ||| ||| || || | | |||| | | |||||| Sbjct 44948 AAAGTATCTCTGGGACATCAAATTGTAAGTTTCGATCACACGTTCAATGTCATTCCCGTG 44889 Query 156398 AATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAAT 156457 ||||| | | || ||||| || |||||| || | || ||| | || | | Sbjct 44888 AATACCAACCGCAACTCTCATGATCAAATGCTGTGGTCTTTCAGCAACCTTCCCGTTGAC 44829 Query 156458 TCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || || | ||||| | ||||| ||| || || ||||| || Sbjct 44828 TCTGAGCAAGTATGATCTTTCCAAAGTCTTGAAACCGAAGTA 44787 >seq1 Length=1779567 Score = 102 bits (112), Expect = 2e-16 Identities = 117/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | || ||| |||||||| || || || |||||||| ||||| ||| Sbjct 1219648 AGAATTTCCTTAAGACGAGGAACACCCAATGTAACATT---CTTGGACGACACACCGGCA 1219592 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 | ||||| ||||||| || | || |||| || ||||| ||| |||||| ||||| Sbjct 1219591 TAATGGAATGTATTCAACGTCATCTGTGTAGCCGGTTCACCGATAGATTGTGCGGCAATA 1219532 Query 301933 ATACCAACCATTTCTCCTGGTGCTACAATAGACTTCT 301969 | |||||||||||| ||||| ||||| ||||||| Sbjct 1219531 ACACCAACCATTTCACCTGGGTGAACAATCGACTTCT 1219495 >seq2 Length=922268 Score = 87.8 bits (96), Expect = 5e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 |||| ||| |||| |||||||||||| |||| ||||| | | |||| ||| |||| Sbjct 594103 CTTTCTTTTCCAATAGCATCAATTTCATCAACAAAAATGATAGCTGGAGCCATTTCTCTC 594044 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || || || || || || ||||| || || || | ||||||| |||| || ||||| Sbjct 594043 GCTGTTTTGAACAAATCCCTGACACGCGAAGCACCCACACCAACAAACATCTCAACAAAC 593984 Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 |||||| | || || | ||| | ||| || || || || || | || | | Sbjct 593983 TCAGAACCAGAAACAGACAAGAAAGGAACACCAGCCTCACCAGCAGTAGCTTTAGCTAAA 593924 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCC 289226 || ||||||||||| ||||| || || Sbjct 593923 AGCGTCTTACCTGTACCAGGAGGACC 593898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816600543861