Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 136 5e-27 seq1 116 4e-21 seq13 87.8 2e-12 >seq14 Length=288459 Score = 136 bits (150), Expect = 5e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| ||||| || ||| | || |||||||| | Sbjct 84617 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAGTCTTCT 84558 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || |||||||||| |||||||| |||||||||||||||||| Sbjct 84557 GACACCATTGACAACGTTAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAG 84498 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || |||||||||||| | || || | | || | | ||||| || Sbjct 84497 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAAC 84438 Query 27586 GTCCAAAAGGAATCCACT 27603 |||||||||| |||||| Sbjct 84437 ATCCAAAAGGAGTCCACT 84420 Score = 129 bits (142), Expect = 7e-25 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 27398 TTACTA--TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 |||||| |||||||||||||||| || || | ||||||||||| || || | || || Sbjct 85083 TTACTACATAATGCAAATCTTTGTTAAAACCTTGACCGGCAAGACCATCACATTGGAAGT 85024 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||| || || | || | || | ||| | || || || || |||||||||||||| Sbjct 85023 TGAATCTTCCGACACTATCGACAACGTTAAGTCCAAGATCCAAGATAAGGAGGGAATTCC 84964 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 ||| |||||||| | | |||||||||||||||||| | || || | | | ||| | | Sbjct 84963 TCCTGACCAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTC 84904 Query 27576 AGACTATAATGTCCAAAAGGAATCCACT 27603 ||||| || |||||||||| |||||| Sbjct 84903 CGACTACAACATCCAAAAGGAGTCCACT 84876 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| ||||| || ||| | || ||||| || Sbjct 84161 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCGTCC 84102 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || || ||||||||||||||||| || |||||| Sbjct 84101 GACACTATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAG 84042 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || |||||||||||| | || |||| | || | | ||||| || Sbjct 84041 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCCGACTACAAC 83982 Query 27586 GTCCAAAAGGAATCCACT 27603 | || |||||||||||| Sbjct 83981 ATTCAGAAGGAATCCACT 83964 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| ||||| || ||| | || ||||| || Sbjct 84389 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTTTAGAAGTTGAATCGTCC 84330 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | || || || ||||||||||||||||| || |||||| Sbjct 84329 GACACTATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATTCCACCTGACCAG 84270 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || |||||||||||| | || || | | || | | ||||| || Sbjct 84269 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCCGACTACAAC 84210 Query 27586 GTCCAAAAGGAATCCACT 27603 |||||||||| |||||| Sbjct 84209 ATCCAAAAGGAGTCCACT 84192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || ||| | || ||||| || Sbjct 84845 ATGCAAATTTTCGTTAAGACTTTGACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCC 84786 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || |||||||||||||| || || |||||| Sbjct 84785 GACACAATTGACAATGTTAAGTCCAAGATCCAAGACAAGGAGGGAATCCCACCTGACCAG 84726 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || |||||||||||| | || || | | | ||| | | ||||| || Sbjct 84725 CAAAGATTGATCTTCGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAAC 84666 Query 27586 GTCCAAAAGGAATCCAC 27602 | || |||||||| || Sbjct 84665 ATTCAGAAGGAATCTAC 84649 >seq1 Length=1779567 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | || || ||||| ||||| | ||||| || || | Sbjct 999478 ATGCAAATCTTTGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAGGTCGAATCCTCT 999537 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || || |||||||| || ||||| || |||||| Sbjct 999538 GACACCATCGACAATGTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAG 999597 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| ||||||||| | ||||| | | ||| | | ||||| || Sbjct 999598 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGACGGCAGAACCTTGTCCGACTACAAC 999657 Query 27586 GTCCAAAAGGAATCCAC 27602 ||||||||||||| || Sbjct 999658 ATCCAAAAGGAATCTAC 999674 >seq13 Length=360411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 80036 GCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAG 80095 |||| | || |||||||| |||||||| | ||||||||||| ||||| | |||||| | Sbjct 46587 GCGTTCTCAAGTAGTACATACCCGTCTTCAATCCCTTCTTCCATCCGTAAAAGTGCATGG 46528 Query 80096 AACTGAGCTTCGCAAGTGTGGGGTTCTC-CATGAAGATGTTCAGAGACTGAGACTGACAG 80154 || | | ||| | | || ||||||| ||| |||||||| ||||| |||||| Sbjct 46527 AAGTCAACTTACCCATAGT-AGGTTCTCTGATGTGGATGTTCAACGACTGTGACTGATCA 46469 Query 80155 ATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACT 80214 || || || | | || || ||||| ||||| || ||| || | |||||||| || Sbjct 46468 ATAAACGCAGCTCTGTCGGCAGCCATGTCAATGATATGCTTCTGAGAGATTTCCCACACG 46409 Query 80215 GT 80216 || Sbjct 46408 GT 46407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310022169360