Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 2e-15 seq1 96.9 2e-15 >seq14 Length=288459 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||| | || |||||||| || || |||||||| |||| | | ||||||||| Sbjct 84959 GACCAGCAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGAC 84900 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| ||||||||| ||||| ||| | ||| | || || Sbjct 84899 TACAACATCCAAAAGGAGTCCACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 84847 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| |||| || |||||| | || || || || || || |||||||| Sbjct 84524 GACAAGGAAGGAATTCCTCCAGACCAGCAAAGATTGATCTTCGCTGGTAAGCAATTGGAA 84465 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | |||||||| |||||||||||||| ||| ||||||||| ||||| ||| Sbjct 84464 GACGGCAGAACTTTGTCCGACTACAACATCCAAAAGGAGTCCACTTTGCACTTGGTGTTG 84405 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 84404 AGATTGAGAGGTGG 84391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| || |||||| | || || || || || || |||||||| Sbjct 84296 GACAAGGAGGGAATTCCACCTGACCAGCAAAGATTGATCTTCGCTGGTAAGCAATTGGAA 84237 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | |||||||| |||||||||||||| ||| ||||||||| ||||| ||| Sbjct 84236 GACGGCAGAACTTTGTCCGACTACAACATCCAAAAGGAGTCCACTTTGCACTTGGTGTTG 84177 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 84176 AGATTGAGAGGTGG 84163 >seq1 Length=1779567 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | || || || ||||| | || |||||| | | Sbjct 999478 ATGCAAATCTTTGTTAAGACTTTGACAGGTAAGACCATTACCTTGGAGGTCGAATCCTCT 999537 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||| |||||| |||| || | Sbjct 999538 GACACCATCGACAAT--GTTAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 999595 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || |||||||| || |||||||| |||| | | ||||||||| |||| Sbjct 999596 AGCAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGACGGCAGAACCTTGTCCGACTACA 999655 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || ||||| ||||| ||| | ||| | || || Sbjct 999656 ACATCCAAAAGGAATCTACCTTGCACTTGGTGTTGAGATTGAGAGGTGG 999704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862170135131