Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08]
53 sequences; 11,992,787 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq14 174 4e-38
seq1 156 1e-32
seq41 107 5e-18
seq13 84.2 5e-11
>seq14
Length=288459
Score = 174 bits (192), Expect = 4e-38
Identities = 168/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | ||||||||| || || | ||||| |||| ||||||||| ||
Sbjct 83946 TCTCAACACCAAGTGCAAAGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTTCTGCC 84005
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | ||||| ||||||||||| | || ||| ||||| || ||||| || |||||
Sbjct 84006 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAATTCCCTCCTT 84065
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| ||| ||||| ||||| || | ||| || ||||| |||||
Sbjct 84066 GTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTCTAAAGTGAT 84125
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | ||| | ||||||
Sbjct 84126 GGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84161
Score = 174 bits (192), Expect = 4e-38
Identities = 168/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||| || ||||||| ||||| |||| ||||||||| ||
Sbjct 84174 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTGCC 84233
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| ||||||||||| | || ||| ||||| || ||||| || |||||
Sbjct 84234 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAATTCCCTCCTT 84293
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| ||| ||||| ||||| || | ||| || ||||| |||||
Sbjct 84294 GTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTCTAAAGTGAT 84353
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | ||| | ||||||
Sbjct 84354 GGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84389
Score = 159 bits (176), Expect = 8e-34
Identities = 167/217 (77%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||| || ||||||| ||||| |||| ||||||||| ||
Sbjct 84402 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTGCC 84461
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| ||||||||||| | || ||| ||||| || ||||| ||||||||
Sbjct 84462 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGAATTCCTTCCTT 84521
Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676
|||||| || ||| | || | | | || |||||||| || | || || ||||| ||||
Sbjct 84522 GTCTTGAAT-TTTAGATTTAACGTTGTCAATGGTGTCAGAAGACTCAACTTCTAAAGTGA 84580
Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
| ||||| || |||||||| || | ||| | ||||||
Sbjct 84581 TGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84617
Score = 149 bits (164), Expect = 1e-30
Identities = 163/217 (75%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | |||||| || ||||||| ||||| |||| ||| ||||| ||
Sbjct 84858 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACC 84917
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| ||||| || || | || ||| ||||| || ||||| || |||||
Sbjct 84918 GTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGAGGAATTCCCTCCTT 84977
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| ||| || ||||| ||||| || | ||| || || || |||||
Sbjct 84978 ATCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGATTCAACTTCCAATGTGAT 85037
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||||||| ||||| ||||| | || | |||||||
Sbjct 85038 GGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCATT 85074
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | || ||||| || || | ||||| || | ||| ||||| ||
Sbjct 84630 TCTCAAAACCAAGTGCAAGGTAGATTCCTTCTGAATGTTGTAGTCAGACAAGGTTCTACC 84689
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | ||||| ||||||||||| | || ||| ||||| || || || || |||||
Sbjct 84690 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGGATTCCCTCCTT 84749
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| ||| || || ||||| || | ||| || ||||| |||||
Sbjct 84750 GTCTTGGATCTTGGACTTAACATTGTCAATTGTGTCGGAAGATTCAACTTCTAAAGTGAT 84809
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | ||| | ||||||
Sbjct 84810 GGTCTTACCAGTCAAAGTCTTAACGAAAATTTGCAT 84845
>seq1
Length=1779567
Score = 156 bits (172), Expect = 1e-32
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | ||| | || ||||| ||||||| ||||| |||| ||| ||||| ||
Sbjct 999693 TCTCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 999634
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|| || | ||||| || || ||||| | || ||| ||||| || ||||||||||||||
Sbjct 999633 GTCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCAGGTGGAATACCTTCCTT 999574
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||||||||| ||| ||| ||||||||||| |||| ||| || || || || ||
Sbjct 999573 GTCTTGGATCTTGGACTTAACATTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 999514
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | || | ||||||
Sbjct 999513 GGTCTTACCTGTCAAAGTCTTAACAAAGATTTGCAT 999478
>seq41
Length=1865
Score = 107 bits (118), Expect = 5e-18
Identities = 94/113 (83%), Gaps = 3/113 (3%)
Strand=Plus/Minus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||||| ||||||||| | |||||||| | || ||| | |||||
Sbjct 992 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 934
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878
|||||| ||||||| |||||||||||||||| ||||| || |||| |||||
Sbjct 933 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGA 881
Score = 104 bits (114), Expect = 6e-17
Identities = 100/127 (79%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795
||||||| |||| ||||| || ||||||||||||| ||||||||||| | || |
Sbjct 327 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCC 386
Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA-ATATTTACGC 7854
|||||| || |||||||||||||||||||| |||| | | |||| ||| | || | ||
Sbjct 387 CCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGATAACTTAATGC 446
Query 7855 GTTAGCT 7861
|||||||
Sbjct 447 GTTAGCT 453
>seq13
Length=360411
Score = 84.2 bits (92), Expect = 5e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642
|||||| | |||||| || || || | ||| | ||||| ||||| |||||||||||
Sbjct 45524 CCAAAGCTTTTGAGCCTTGACGGTGGATCTTCCACGGCCTTCTCTCTCATACTTTTCGTA 45465
Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702
|| | ||||| || | ||||||| || | | ||| |||||||| ||||| ||||
Sbjct 45464 CAAAGCTTCAAACTCATCGCCGTAGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAA 45405
Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAA 193741
| | |||| || || | ||| || |||||||||||
Sbjct 45404 CAAAGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAA 45366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192530390196782
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |