Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14 174 4e-38 seq1 156 1e-32 seq41 107 5e-18 seq13 84.2 5e-11 >seq14 Length=288459 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||||||||| || || | ||||| |||| ||||||||| || Sbjct 83946 TCTCAACACCAAGTGCAAAGTGGATTCCTTCTGAATGTTGTAGTCGGACAAAGTTCTGCC 84005 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||||||||| | || ||| ||||| || ||||| || ||||| Sbjct 84006 ATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAATTCCCTCCTT 84065 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||| ||||| || | ||| || ||||| ||||| Sbjct 84066 GTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTCTAAAGTGAT 84125 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 84126 GGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84161 Score = 174 bits (192), Expect = 4e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | |||||| || ||||||| ||||| |||| ||||||||| || Sbjct 84174 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTGCC 84233 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||||||||| | || ||| ||||| || ||||| || ||||| Sbjct 84234 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGAATTCCCTCCTT 84293 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||| ||||| || | ||| || ||||| ||||| Sbjct 84294 GTCTTGGATCTTGGACTTAACATTGTCGATAGTGTCGGACGATTCAACTTCTAAAGTGAT 84353 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 84354 GGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84389 Score = 159 bits (176), Expect = 8e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | |||||| || ||||||| ||||| |||| ||||||||| || Sbjct 84402 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTGCC 84461 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||||||||| | || ||| ||||| || ||||| |||||||| Sbjct 84462 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGAATTCCTTCCTT 84521 Query 225618 GTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| || ||| | || | | | || |||||||| || | || || ||||| |||| Sbjct 84522 GTCTTGAAT-TTTAGATTTAACGTTGTCAATGGTGTCAGAAGACTCAACTTCTAAAGTGA 84580 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || |||||||| || | ||| | |||||| Sbjct 84581 TGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84617 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | |||||| || ||||||| ||||| |||| ||| ||||| || Sbjct 84858 TCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACC 84917 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| || || | || ||| ||||| || ||||| || ||||| Sbjct 84918 GTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGTCAGGAGGAATTCCCTCCTT 84977 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || ||||| ||||| || | ||| || || || ||||| Sbjct 84978 ATCTTGGATCTTGGACTTAACGTTGTCGATAGTGTCGGAAGATTCAACTTCCAATGTGAT 85037 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| ||||| ||||| | || | ||||||| Sbjct 85038 GGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCATT 85074 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | || ||||| || || | ||||| || | ||| ||||| || Sbjct 84630 TCTCAAAACCAAGTGCAAGGTAGATTCCTTCTGAATGTTGTAGTCAGACAAGGTTCTACC 84689 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||||||||| | || ||| ||||| || || || || ||||| Sbjct 84690 GTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGTGGGATTCCCTCCTT 84749 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || ||||| ||||| Sbjct 84750 GTCTTGGATCTTGGACTTAACATTGTCAATTGTGTCGGAAGATTCAACTTCTAAAGTGAT 84809 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 84810 GGTCTTACCAGTCAAAGTCTTAACGAAAATTTGCAT 84845 >seq1 Length=1779567 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | || ||||| ||||||| ||||| |||| ||| ||||| || Sbjct 999693 TCTCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTGCC 999634 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || || | ||||| || || ||||| | || ||| ||||| || |||||||||||||| Sbjct 999633 GTCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCAGGTGGAATACCTTCCTT 999574 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| ||||||||||| |||| ||| || || || || || Sbjct 999573 GTCTTGGATCTTGGACTTAACATTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 999514 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | || | |||||| Sbjct 999513 GGTCTTACCTGTCAAAGTCTTAACAAAGATTTGCAT 999478 >seq41 Length=1865 Score = 107 bits (118), Expect = 5e-18 Identities = 94/113 (83%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 992 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 934 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||||| ||||||| |||||||||||||||| ||||| || |||| ||||| Sbjct 933 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATGCCGCGTGA 881 Score = 104 bits (114), Expect = 6e-17 Identities = 100/127 (79%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | || | Sbjct 327 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCC 386 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA-ATATTTACGC 7854 |||||| || |||||||||||||||||||| |||| | | |||| ||| | || | || Sbjct 387 CCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGATAACTTAATGC 446 Query 7855 GTTAGCT 7861 ||||||| Sbjct 447 GTTAGCT 453 >seq13 Length=360411 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193583 CCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTTCCTTCCCTCTCGTACTTTTCGTA 193642 |||||| | |||||| || || || | ||| | ||||| ||||| ||||||||||| Sbjct 45524 CCAAAGCTTTTGAGCCTTGACGGTGGATCTTCCACGGCCTTCTCTCTCATACTTTTCGTA 45465 Query 193643 CAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGACCGGGAGCTTCCTTTGGGCAAAA 193702 || | ||||| || | ||||||| || | | ||| |||||||| ||||| |||| Sbjct 45464 CAAAGCTTCAAACTCATCGCCGTAGACATCAGCCAAACCAGGAGCTTCATTTGGAGAAAA 45405 Query 193703 GAGACTCCAATCTCCATCACTTTCCACCCTCTTCATGAA 193741 | | |||| || || | ||| || ||||||||||| Sbjct 45404 CAAAGTCCAGTCACCGTTTTGTTCAACTCTCTTCATGAA 45366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530390196782