Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clavispora_20lusitaniae_20[genbank_20GCA_5F001673695.2_202017-06-08] 53 sequences; 11,992,787 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 141 7e-29 seq14 127 1e-24 >seq1 Length=1779567 Score = 141 bits (156), Expect = 7e-29 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-C 44169 || ||||||| ||||||||||| ||| | || ||||||||||||||||| |||| | Sbjct 999704 CCACCTCTCAATCTCAACACCAAGTGCAAGGTAGATTCCTTTTGGATGTTGTAGTCGGAC 999645 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || |||| |||| ||||| |||||||||||||| | ||||| || | || Sbjct 999644 AAGGTTCTGC-CGTCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGCTGGTCAGGTGG 999586 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287 | ||||||||| || ||||| ||| || ||| | |||||||| | |||||| Sbjct 999585 AATACCTTCCTTGTCTTGGATCTTGGACTTAACATTGT--CGATGGTGTCAGAGGATTCG 999528 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| ||||| || || | ||||| || ||||||||||| Sbjct 999527 ACCTCCAAGGTAATGGTCTTACCTGTCAAAGTCTTAACAAAGATTTGCAT 999478 >seq14 Length=288459 Score = 127 bits (140), Expect = 1e-24 Identities = 176/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| ||| | ||| |||||||||||||||||| Sbjct 84840 TTGCATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTA 84899 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | |||| |||| ||||| || ||||| ||||| | ||||| | Sbjct 84900 GTCGGACAAGGTTCTAC-CGTCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGCTGGT 84958 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 | | ||| | || ||||| || ||||| ||| || ||| | || ||||||| Sbjct 84959 CAGGAGGAATTCCCTCCTTATCTTGGATCTTGGACTT-AACGTTGTCGATAGTGTCGGAA 85017 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| || |||| || || ||||| || || | ||| || || ||||||||||| ||| Sbjct 85018 GATTCAACTTCCAATGTGATGGTCTTGCCGGTCAAGGTTTTAACAAAGATTTGCATTATG 85077 Query 44342 T 44342 | Sbjct 85078 T 85078 Score = 123 bits (136), Expect = 2e-23 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| ||| | ||| |||||||||||||||||| Sbjct 84384 TTGCATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTA 84443 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | | | || |||| |||| ||||| || || |||||||| | ||||| | Sbjct 84444 GTCGGACAAAGTTCTGC-CGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGT 84502 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCG 44281 ||| ||| | |||||||| | | | | || | || || ||| | |||||||| | Sbjct 84503 CTGGAGGAATTCCTTCCTTGT-CTTGAATTTTAGATTTAACGTTGTCAATGGTGTCAGAA 84561 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 84562 GACTCAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84617 Score = 118 bits (130), Expect = 8e-22 Identities = 171/237 (72%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||||||||| ||| | ||| |||||||||||||||||| Sbjct 84156 TTGCATACCACCTCTCAATCTCAACACCAAGTGCAAAGTGGACTCCTTTTGGATGTTGTA 84215 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | | | || |||| |||| ||||| || || |||||||| | ||||| | Sbjct 84216 GTCGGACAAAGTTCTGC-CGTCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGT 84274 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGC 44280 | | || | || ||||| || ||||| ||| || ||| | || ||||||| Sbjct 84275 CAGGTGGAATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGT--CGATAGTGTCGGA 84332 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 84333 CGATTCAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84389 Score = 100 bits (110), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| ||||||| ||||||||||| ||| | ||| ||||| || |||||||| |||| Sbjct 83933 TTCCACCTCTCAATCTCAACACCAAGTGCAAAGTGGATTCCTTCTGAATGTTGTAGTCGG 83992 Query 44169 -CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | | | || | || |||| ||||| || || |||||||| | ||||| || | Sbjct 83993 ACAAAGTTCTGC-CATCTTCCAATTGCTTACCAGCGAAGATCAATCTTTGCTGGTCAGGT 84051 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| ||| || ||| | || ||||||| |||| Sbjct 84052 GGAATTCCCTCCTTGTCTTGGATCTTGGACTTAACATTGT--CGATAGTGTCGGACGATT 84109 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||| || || | ||||| |||||||||||||| Sbjct 84110 CAACTTCTAAAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATTTGCAT 84161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990167468701