Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 168 7e-37 seq1 116 4e-21 seq4 100 3e-16 seq7 96.9 4e-15 >seq5 Length=1593029 Score = 168 bits (186), Expect = 7e-37 Identities = 409/615 (67%), Gaps = 11/615 (2%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC--GCATGT 116648 |||||| ||||| || || ||||||| || | |||| || || |||| |||| Sbjct 294149 GAGAACAAGCGCCGTTTTGTTCTTTTCCCAATCAAGTACCATGAGATCTGGCAGGCAT-- 294092 Query 116649 ACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGA 116708 |||| ||||| || || || |||||||||| |||||| | || |||| ||||| | Sbjct 294091 ACAAGAAGGCTGAAGCTTCTTTCTGGACCGCTGAGGAGATTGATTTGTCTAAGGATTTGC 294032 Query 116709 GCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCT 116765 || ||| | | ||||| || || || || |||||| | || || |||| Sbjct 294031 ATGATTGGAACAACAGATTGAATGAGAATGAACGTTTCTTCATCTCTCGTGTTCTTGCCT 293972 Query 116766 TTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGG 116825 | || ||||| ||||| ||||| || ||||| |||| ||| ||| || |||| Sbjct 293971 TCTTTGCCGCTTCTGACGGTATCGTTAATGAGAACTTGGTTGAGAACTTCTCTGCCGAGG 293912 Query 116826 TGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACT 116885 |||| | | || || ||| |||||||| || || ||| ||||||||| | |||| Sbjct 293911 TGCAAATTCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATCATGATGGAGAACATTCACT 293852 Query 116886 CGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT- 116944 | || | || || | | || ||||| || | | | | || ||| || Sbjct 293851 CTGAGACATACTCTCTCTTGATTGACACTTATATCAAGGATCCACAACAG--GCTGAGTA 293794 Query 116945 -TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 ||||| || ||||| ||||| || || || | || ||||||| || ||||| || | Sbjct 293793 TTTGTTTAATGCCATTGAGACTATTCCATGTATTAAGAAGAAGGCTGATTGGGCTTTGAG 293734 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| |||| ||| ||| ||||| ||| | || || ||||| || || || || Sbjct 293733 ATGGATTGCCGATGAAGAAGCCTTGTTCGGTGAGAGACTTGTTGCCTTTGCCGCTGTTGA 293674 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || ||||||| || || || ||| | || || ||| | ||||| | || | || Sbjct 293673 AGGTATCTTCTTCTCTGGTTCCTTTGCCTCTATTTTCTGGTTGAAGAAGAGAGGTTTGAT 293614 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 ||| || |||||||| || ||| | || | | | || || ||| |||| ||||| Sbjct 293613 GCCAGGTTTGACTTTCTCTAATGAGTTGATTTGCCGTGATGAAGGTTTGCACACTGACTT 293554 Query 117184 TGCCTGTTTGCTGTT 117198 |||||||||| |||| Sbjct 293553 TGCCTGTTTGTTGTT 293539 >seq1 Length=3147266 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || | || || || | || Sbjct 843016 ATGCAAATTTTCGTGAAGACCTTGACCGGTAAGACTATTACACTTGAGGTTGAGTCTTCC 843075 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 843076 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCACCTGACCA 843134 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| ||| || || ||||| || || | | |||||| ||||||||| Sbjct 843135 GCAGAGACTTATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGAACCCTCTCCGACTACAA 843194 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || | || ||| | ||||| || || Sbjct 843195 CATCCAGAAGGAGTCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 843242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || || || || |||| || || || || Sbjct 843244 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAGTCCTCC 843303 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 843304 GATACTATTGACAACGTT-AAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCTGACCA 843362 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || || || ||||| || || | | |||||| ||||||||| Sbjct 843363 GCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGATGGTAGAACCCTCTCCGACTACAA 843422 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| | || || || | || ||| | ||||| || || Sbjct 843423 CATTCAGAAGGAGTCAACCCTTCACTTGGTTTTGAGATTGAGAGGTGG 843470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| ||||| ||||| ||||| | || ||||| |||| || Sbjct 842860 AACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAGCAGAGACTTAT 842918 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || || || ||||| || || | | ||||| |||||||||||| |||||||| Sbjct 842919 CTTTGCCGGTAAGCAGCTTGAGGATGGTAGAACCCTTTCCGACTACAACATTCAGAAGGA 842978 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||| || || | || ||| | ||||| || || Sbjct 842979 GTCCACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 843014 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || || || || |||| || ||| || | Sbjct 843472 ATGCAGATCTTTGTCAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAATCCTCT 843531 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| || || || || | ||||| Sbjct 843532 GACACTATTGACAACGTT-AAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCA 843590 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| |||| || || || ||||| || || | | ||| | ||||||||| Sbjct 843591 GCAGAGACTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTAGAACCTTGTCCGACTACAA 843650 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| |||| || || | |||||| | ||||| || || Sbjct 843651 CATTCAGAAGGAGTCCACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 843698 >seq4 Length=1873953 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || | || || || ||||| ||| | || || || || | |||| | | Sbjct 1428223 TTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCCTCTGACACCATT 1428282 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||| ||||| | |||||||| |||| Sbjct 1428283 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGAGACT 1428341 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || |||| | ||||| ||||||||||||||||| Sbjct 1428342 TATCTTCGCCGGTAAGCAGCTCGAGGACGGTAGAACCCTTTCTGACTACAACATCCAGAA 1428401 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| |||| ||||| | || | | ||||| || || Sbjct 1428402 GGAGTCCACTTTGCATTTGGTCCTCAGATTGAGAGGTGG 1428440 >seq7 Length=431226 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || |||||||| || |||||||| | || || || | Sbjct 274915 AAGATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACTTTGGAGGTTGAGTCT 274974 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | ||||| || || | |||||||| || ||||| | ||| Sbjct 274975 TCCGACACTATTGACAATGTCAAGTCCAAGATCCAGGACAAAGAAGGTATCCCACCTGAC 275034 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || ||||| || || | | ||||| |||||| Sbjct 275035 CAGCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAGGATGGTAGAACCCTTTCTGACTAC 275094 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||| ||||||||| |||| || || | ||| | | ||||| || || || Sbjct 275095 AACATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGATTGAGAGGTGGTGG 275147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219122717120