Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 244 9e-60 seq5 132 4e-26 seq1 93.3 4e-14 >seq6 Length=1133955 Score = 244 bits (270), Expect = 9e-60 Identities = 1107/1737 (64%), Gaps = 44/1737 (3%) Strand=Plus/Plus Query 22153 ATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTT 22212 ||| ||||| || ||||||| |||| ||||||| |||| || || || || ||||| || Sbjct 477827 ATAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATAGAGGTCAACTT 477886 Query 22213 TCCATAACTCGGCAAGTCCA-TGTACACATTGAACGACTGACTCTGATCGATAAACGCTC 22271 || | | || | || | ||| | || || || ||| ||||| || || || Sbjct 477887 ACCCATAGTTGG-AGCTCTAATGTGAATGTTCAAAGATTGAGATTGATCAATGAAAGCAG 477945 Query 22272 CTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACA 22331 | ||||| || ||||||| || | || || || ||||| ||||||||||||| Sbjct 477946 CACGATCAGCAGCCATATCGATGATAGTCTTTTGAGAAATCTCCCAAACGGTCTTGTACA 478005 Query 22332 GTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATG 22390 | | | || || || | || | | | || | || ||||||| ||| Sbjct 478006 AATCTTTCAATTCCTTTGGAAT-GTTTGGTAAGTTTTGAATAGAACCGTTATCAGAGATG 478064 Query 22391 ATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGA 22450 || | | || || | || | ||| | ||| | | |||||| | || || Sbjct 478065 ATGTGACTCTTCATAGAGTCATCCCAAACACCCAAATCAACCAAATCACGAAGCAAATAT 478124 Query 22451 CGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || | || || || || | | ||| || || ||||||||| || ||| | Sbjct 478125 GGGTTAACAATCTGGAATTCACCAGCAAGGACACGACGAGAGTAAATGTTAGAAGTGTAT 478184 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 ||||||||| |||| |||| |||| || |||| ||||| || || ||||| || || Sbjct 478185 GGTTCGAAACATTCGTTGTAACCCAAGATTTGAGAAGTCGAGGCAGTTGGCATTGGAGCA 478244 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTT--GAGCATCGACCAGT 22628 | || | ||||||||||| |||| ||| ||| | | ||| ||| ||| ||| | Sbjct 478245 ACAAGCAAAGAGTTTCTCAAACCGTACTTGACAATATCAGCCTTAAGAGTATC--CCAAT 478302 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCG 22688 |||||| |||||| ||| | | |||| | || | || | | || | | Sbjct 478303 CCCACAAATCGGAAGGCTTTC---TTCCCCAAAGGTCAAACTGAAGCTGACCCTTAGAAG 478359 Query 22689 CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCT 22748 | ||| |||| | | | |||||| ||||| | | ||| || || | || Sbjct 478360 CTGGGGAACCTTGGAATGATTCGTATGGACCTTCGGACTTGGCGAGCTCAAGAGAGGACT 478419 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 |||| || ||| ||| || ||||||||||| | |||||||||| || | Sbjct 478420 CCAAAGCAGCGTGATAAATGGTCTCGAAGATCTGAATGTTCAATTCCTTAGCCTTTTCAG 478479 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 ||| | |||| ||||| |||| || || || || | ||| ||||| || | | | Sbjct 478480 ATTCAAATGGCAAACGCAAAATCATAAAGGCATCAGCTAAACCTTGAACACCGAGGGCAA 478539 Query 22869 TCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 | |||| |||| ||| ||| || | | || || || | || || | || || | Sbjct 478540 TTGGTCTGTTTCTCATATTGGAGTTTCTAGCTTCTGGGACTGGGTAGTAGTTACGGTCAA 478599 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | ||||||||||||| | || |||| || | || ||||||| | Sbjct 478600 TGATTCTGTTCAAGTTCTTTGTGACAACCTTGGCAATTTGATGCAAACGTTCAAAGTTAT 478659 Query 22989 AAACGCCCGATTG-TACAA-CAA---ACTTGTTGACG------------GCGATCGAGGC 23031 || | | || || ||| | ||| | || | | | || || ||||| Sbjct 478660 AA--GTCTGAGTGGTACCATCAAGGGATTTTTCAATGAAAGCTGGCAATGCAATGGAGGC 478717 Query 23032 AAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATT 23091 | || || || || || || ||| | | ||| || ||||| || ||| | || Sbjct 478718 CAAGTTACAAACAGCAACTTCTTCTGGGTCAGAGTATTCGACAATCTCACAACACAAGTT 478777 Query 23092 GCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTT-TCGATTGCACGAATCCTTGT 23150 | |||| ||| | ||||| || ||||||| | || ||| || || | |||||||| Sbjct 478778 AGAAGACTTGATCATACCCAAGTTCTTCTGGTTAGTCTTCTCG-TTACAGGCATCCTTGT 478836 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 | |||||| | || || || ||||| ||| | || | ||| || ||||| | | Sbjct 478837 AAAGCATGAATGGAGTACCAGTCTCAGTCTGGGCATCAAGGATTGCATACCACAACTTTT 478896 Query 23211 GAGCGTGAACACGTCGCACGTACCTG--CCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 |||| | ||| ||| | |||| ||||||| ||| ||||| | || | || | Sbjct 478897 GAGCCTTGACA-GTCTTTC-TACCACGACCTTCTTTCTCATACTTCTCATAAAGAGCCTT 478954 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 ||||| |||| |||||||| || || || || | || | ||| | | | | |||| Sbjct 478955 GAATTCATCACCATAACAGTCAGCAAGACCTGGTGCTTCATTTGGAGAGAACAAAGTCCA 479014 Query 23329 CATTGAGTCATT---TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 || | |||| |||||| ||| ||| || | ||| || ||||| | || ||| Sbjct 479015 --TTCAC-CATTAGATTCAACACGTTCCATGAACAAATCAGGGATCCACAATGCTGGGAA 479071 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || || || | | ||| ||||| ||| |||||| | | || | || || || Sbjct 479072 CAAATCACGAGCTCTGATCTCTTCTTTACCGTGATTCTTTCTAATGTCGATGAAATCAAA 479131 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 | || || ||||| || || | |||| |||||| || || |||||||| || || || Sbjct 479132 GATATCTGCGTGCCATGGTTCCAAATAAAGGGCAAATGCACCAGGTCTCTTGTTACCACC 479191 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || ||||||||||| || |||||||| | || | | ||| || | | |||||| || Sbjct 479192 TTGGTCGACGTAACGAGCAGTGTTGTTAAAGACACGAACCATTGGAATCAAACCGTTAGA 479251 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || ||| | |||| |||||| || | ||| ||||| Sbjct 479252 AGTACCGTTAGTACCAGCAATGTAAGAGCCTGTAGCTCTAACGTTATGGATGTGTAAACC 479311 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || | | || || |||| || |||||||||| ||| || ||||| ||||| Sbjct 479312 GATACCACCAGCGGTCTTGGAGATCAAGGCACATTGTTTCAAAGTCTCATAGATACCCTC 479371 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 |||| || ||| | | || || | |||||| || ||||| || | | || ||| | Sbjct 479372 GATGGAATCTTCTCTCATAGCCACAAGGAAACAAGAGGACATCTGTGGGTGTGGGGTACC 479431 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 || ||||| || || ||||| || ||||||| | ||||| || || || || Sbjct 479432 AGCGTTGAACAAAGTTGGAGAAGCGTGGGTGAAGTATCTCTCAGACATGAGGTTATAAGT 479491 Query 23806 GTCGATGGCGGCATCAATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCA 23861 || || | | | ||| | |||| || || |||||||| ||||| | ||| |||| Sbjct 479492 CTCAATAACTGATTTAATAT-CTCTACCATGGATACCGATAGCGACTCTCATGATCA 479547 >seq5 Length=1593029 Score = 132 bits (146), Expect = 4e-26 Identities = 315/471 (67%), Gaps = 4/471 (1%) Strand=Plus/Plus Query 23097 ACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCA 23156 |||| || || |||||||| |||| || || |||| ||| || | |||||| ||||||| Sbjct 214029 ACTTGATTGTACCCAAATTCTTCTGATTACTCTTTCTATTACAAGCATCCTTATAGAGCA 214088 Query 23157 TGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT 23216 || | || || || || || || ||||| | ||| | |||| | ||||||| | Sbjct 214089 TGAAAGGACCACCAGTTTCAACTTGAGACTCCAAGATTGAGTGCCATAACTTCTGAGCCT 214148 Query 23217 GAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCG 23275 || | || | || ||||| | ||| || || || |||| ||||| | Sbjct 214149 TAAT-CTTCTTCTTTGCCAATCCTTCCTTCTCATATTTGTGATACAGTTGAACAAATGCA 214207 Query 23276 GCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGA 23334 |||| || || || || || | | |||| |||| | | | ||| | Sbjct 214208 TCACCATACATCTCATTCAAACCAGGAGCAT-CATCTGGACTAAACAAGCACCATTCTTC 214266 Query 23335 GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCG 23394 || || ||||| | ||| || ||||| || ||||||||||| ||||||| || || Sbjct 214267 ATCTTTCTCAACTTTTTCCATGAATAGATCTGGGATCCATAGAGCATAGAACAAATCACG 214326 Query 23395 GGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGC 23454 || | || ||| || || || ||||| | || | || || |||| ||| || || Sbjct 214327 AGCTCTCATCTCTTCCTTTCCATGATTCTTCCTTAAGTTTAAGAAATCCATCACATCAGC 214386 Query 23455 ATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGAC 23514 |||||| || || | || | |||||| || || ||||||||||| || || ||||| || Sbjct 214387 ATGCCATGGTTCCAAATAGATGGCAAATGCACCTGGTCTCTTATTACCACCTTGATCAAC 214446 Query 23515 GTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 || | || ||||| || ||||||| ||||| || |||| |||||| || Sbjct 214447 ATATCTTGCAGTGTTATTAAACACTCTAAGCATAGGTACGATACCGTTTGA 214497 >seq1 Length=3147266 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || || |||| ||||| | ||| Sbjct 843244 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAGTCCTCC 843303 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | | || |||| | | | || || ||||||||| || | || || ||||| Sbjct 843304 GATACTATTGACAACGTTAAGTCTAAG-ATCCAGGACAAGGAGGGTATCCCACCTGACCA 843362 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | ||||| || || | ||| || || Sbjct 843363 GCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGATGGTAGAACCCTCTCCGACTACAA 843422 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || || || ||||| |||| | ||| |||| || |||| Sbjct 843423 CATTCAGAAGGAGTCAACCCTTCACTTGGTTTTGAGATTGAGAGGTGGTA 843472 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || || || || |||| |||||| | || Sbjct 843472 ATGCAGATCTTTGTCAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAATCCTCT 843531 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || |||| | | | ||| | | |||||||||| | || || ||||| Sbjct 843532 GACACTATTGACAACGTTAAGTCTAAGATTCAAG-ACAAGGAAGGTATTCCACCTGACCA 843590 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || ||||| || ||| | || || || || || ||| || || Sbjct 843591 GCAGAGACTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTAGAACCTTGTCCGACTACAA 843650 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| || || || |||||||| |||| | ||| |||| || ||| Sbjct 843651 CATTCAGAAGGAGTCCACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 843699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| |||| || || || || || | || ||||| | ||| Sbjct 843016 ATGCAAATTTTCGTGAAGACCTTGACCGGTAAGACTATTACACTTGAGGTTGAGTCTTCC 843075 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || |||||| Sbjct 843076 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCACCTGACCAG 843135 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | ||||| | || | ||| || ||| Sbjct 843136 CAGAGACTTATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGAACCCTCTCCGACTACAAC 843195 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || |||||||| |||| | ||| |||| || |||| Sbjct 843196 ATCCAGAAGGAGTCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGTA 843244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766333135040