Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 271 1e-67 seq5 188 9e-43 >seq6 Length=1133955 Score = 271 bits (300), Expect = 1e-67 Identities = 1319/2073 (64%), Gaps = 44/2073 (2%) Strand=Plus/Plus Query 62042 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 62100 |||| ||||| ||||| | ||| || || | | || | | ||||||||| || || | Sbjct 477784 CAATAGTGAACTGAATAGCAGCAGAAGCAGCCTGGGTTCTCAAATAGTACATACCAGTCT 477843 Query 62101 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTG 62160 | | ||| |||| ||||| || |||||| || | || | | ||| || Sbjct 477844 TCAAACCCTTCTTCCAACCGTAGAAGTGCATAGAGGTCAACTTACCCATAGTTGGAGCTC 477903 Query 62161 CTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTT 62220 || || || |||| ||||||| |||||| ||||| || | | || |||||||| | Sbjct 477904 TAATGTGAATGTTCAAAGATTGAGATTGATCAATGAAAGCAGCACGATCAGCAGCCATAT 477963 Query 62221 TTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCT 62279 ||||| |||||||| | ||| ||||||| || || || || || | ||| ||| | Sbjct 477964 CGATGATAGTCTTTTGAGAAATCTCCCAAACGGTCTTGTACAAATCTTTCAATTCCTT-T 478022 Query 62280 GGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCA 62336 |||| ||||| || || ||||| || || ||| || || | |||| || Sbjct 478023 GGAATGTTTGGTAAGTTTTGAATAGAACCGTTATCAGAGATGATGTGACTCTTCATAGAG 478082 Query 62337 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAAT 62396 |||| ||| | || ||| | | ||| | || |||||||| | |||||| Sbjct 478083 TCATCCCAAACACCCAAATCAACCAAATCACGAAGCAAATATGGGTTAACAATCTGGAAT 478142 Query 62397 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62456 || |||| | || | |||| |||||| ||| || || ||||| | | || || Sbjct 478143 TCACCAGCAAGGACACGACGAGAGTAAATGTTAGAAGTGTATGGTTCGAAACATTCGTTG 478202 Query 62457 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62516 | ||||| ||||||| ||| || ||||| ||||| || || || | ||| ||||| Sbjct 478203 TAACCCAAGATTTGAGAAGTCGAGGCAGTTGGCATTGGAGCAACAAGCAAAGAGTTTCTC 478262 Query 62517 AGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG--TA 62574 | |||||| | || | | | || ||| ||||||| ||| | ||| || || | Sbjct 478263 AAACCGTACTTGACAATATCAGCCTTAAGAGTATCCCAATCCCACAAATCGGAAGGCTTT 478322 Query 62575 CAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62634 | | | | || || ||| ||| || || ||| ||| | Sbjct 478323 CTTC--CCCAAAGGTCAAACTGAAGCTGACCCTTAGAAGCTGGGGAACCTTGGAATGATT 478380 Query 62635 CATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGG 62694 | ||||| ||||| || || || | | | | ||| || ||| ||| |||||||| Sbjct 478381 CGTATGGACCTTCGGACTTGGCGAGCTCAAGAGAGGACTCCAAAGCAGCGTGATAAATGG 478440 Query 62695 TTTCAAAGATCTTCTTATTTAGATCTTGTGC-TTCCGGGCTATCAAATGGATAATTTAAG 62753 | || ||||||| | || | || | || || | | |||||||| || || Sbjct 478441 TCTCGAAGATCTGAATGTTCAATTCCTTAGCCTTTTCAGAT-TCAAATGGCAAACGCAAA 478499 Query 62754 AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTA 62813 | ||||| || || ||||| ||||||||||| | | || ||||| | |||| |||| Sbjct 478500 ATCATAAAGGCATCAGCTAAACCTTGAACACCGAGGGCAATTGGTCTGTTTCTCATATTG 478559 Query 62814 GAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---T 62870 ||| || ||||||||| | || || || ||| || || ||| | || | || | Sbjct 478560 GAGTTTCTAGCTTCTGGGACTGGGTAGTAGTTACGGTCAATGATTCTGTTCAAGTTCTTT 478619 Query 62871 CTGACAA--TT---ACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGC-CCATCT 62924 |||||| || | ||||| | | |||| | | || | | | ||||| Sbjct 478620 GTGACAACCTTGGCAATTTGATGCAAACGTTCAAAGTTATAAGTCTGAGTGGTACCATCA 478679 Query 62925 A------TTACAAACAT-GTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCA 62975 | || ||| | | | |||||||| || |||| ||||| || || || || Sbjct 478680 AGGGATTTTTCAATGAAAGCTGGCAATGCAATGGAGGCCAAGTTACAAACAGCAACTTCT 478739 Query 62976 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAA 63035 | | || | |||| | |||||| || | ||| | ||||||| | || || Sbjct 478740 TCTGGGTCAGAGTATTCGACAATCTCACAACACAAGTTAGAAGACTTGATCATACCCAAG 478799 Query 63036 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 63095 || | || ||| |||| | |||||| |||||||| ||||| ||||||||||||||||| Sbjct 478800 TTCTTCTGGTTAGTCTTCTCGTTACAGGCATCCTTGTAAAGCATGAATGGAGTACCAGTC 478859 Query 63096 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 63155 ||| |||| | || | || || | ||| | | ||||||| | | ||| || Sbjct 478860 TCAGTCTGGGCATCAAGGATTGCATACCACAACTTTTGAGCCTTGACAGTC--TTTCTAC 478917 Query 63156 CTC--CTTTCTCTTTCGTATAGAGTATACA-ATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | | | |||| | || || ||| | | | || ||| || || || || || | Sbjct 478918 CACGACCTTCTTTCTCATACTTCTCATAAAGAGCCTT-GAATTCATCACCATAA-CAGTC 478975 Query 63213 TCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63271 ||| | || ||||| ||| | | ||| | ||| || || | | | || || Sbjct 478976 AGCAAGACCTGGTGCTTCATTTGGAGAGAACAAAGTCCATTCACCATTAGATTCAACACG 479035 Query 63272 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 || ||| || | |||||| ||||| | ||| || | ||| | | ||| || || Sbjct 479036 TTCCATGAACAAATCAGGGATCCACAATGCTGGGAACAAATCACGAGCTCTGATCTCTTC 479095 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || || ||||||| ||| |||| ||| | | ||||| | ||||| |||||||| Sbjct 479096 TTTACCGTGATTCTTTCTAATGTCGATGAAATCAAAGATATCTGCGTGCCATGGTTCCAA 479155 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 || | ||| | | ||||| | ||||| || || || || | ||| | ||| ||||| Sbjct 479156 ATAAAGGGCAAATGCACCAGGTCTCTTGTTACCACCTTGGTCGACGTAACGAGCAGTGTT 479215 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 ||| | || | | ||||||||| | |||||| || |||| || ||||| | || || Sbjct 479216 GTTAAAGACACGAACCATTGGAATCAAACCGTTAGAAGTACCGTTAGTACCAGCAATGTA 479275 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 || | || | || ||| || || ||| || || || || | || ||||| Sbjct 479276 AGAGCCTGTAGCTCTAACGTTATGGATGTGTAAACCGATACCACCAGCGGTCTTGGAGAT 479335 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 || || ||| |||| || || |||||||| || || ||| ||| || |||| | Sbjct 479336 CAAGGCACATTGTTTCAAAGTCTCATAGATACCCTCGATGGAATCTTCTCTCATAGCCAC 479395 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 || ||||| ||||| || | | | || || || || || || || |||||||| Sbjct 479396 AAGGAAACAAGAGGACATCTGTGGGTGTGGGGTACCAGCGTTGAACAAAGTTGGAGAAGC 479455 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| || || || | ||||| | || || || ||||||||| |||| | ||||| | Sbjct 479456 GTGGGTGAAGTATCTCTCAGACATGAGGTTATAAGTCTCAATAACTGATTTAATATCTCT 479515 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 ||| || || | ||||| | ||| | || ||||| || | |||| | | ||| Sbjct 479516 ACCATGGATACCGATAGCGACTCTCATGATCAAATGCTGTGGACGTTCAGCGACTTTACC 479575 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAA 63869 || | ||||||||| ||| | ||||| || || |||||||| ||||| || |||| Sbjct 479576 ATTAACACGCAACAAGTAAGATCTCTCCAATGTCTTGAAACCAAAGTAGTTATAGTTGAA 479635 Query 63870 AAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCC 63929 | |||| ||||| || || | || | | || || || | | | ||| || | | Sbjct 479636 A--TCTCTATCGTAGATGATGGCAGAGTCCAACTCGTCTTTGAACTCTTGAACAATGT-C 479692 Query 63930 ATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAA 63988 || | ||| || | ||||||||||| | | || || |||| |||||| | Sbjct 479693 ATAAGTTTCCTTAGACAACATCGGAGAATGGAGATCGGTCTTTGGGTTAATGTAGTTGTA 479752 Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 | || || | || | || |||| | |||| ||| || | ||| || ||||| Sbjct 479753 AAGCTCTTCGACAACAGAAGAGAACTGTTTAGTGGTTTGCTTATGCAAATTAGAGATGGC 479812 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 ||||| || |||| | | ||||| || ||||| Sbjct 479813 AATTCTAGCAGCTAAAGTAGCATAGTCTGGATG 479845 >seq5 Length=1593029 Score = 188 bits (208), Expect = 9e-43 Identities = 410/608 (67%), Gaps = 12/608 (2%) Strand=Plus/Plus Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 ||||| ||||| |||||| || || || ||||| ||| || || | | ||| || Sbjct 293530 AAATGAGCAAACAACAAACAGGCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAAC 293589 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 || ||||| || || | || ||||| | || | ||| || | ||| || || || || Sbjct 293590 TCATTAGAGAAAGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCA 293649 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || || || || |||||||| ||||| || || |||||||||| ||||||||| || | Sbjct 293650 AAGGAACCAGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCGAAC 293709 Query 33744 CCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 ||| |||| ||||| | ||||||||| |||||||| || | ||| || Sbjct 293710 AAGGCTTCTTCATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTAATACATGGA 293769 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 || || || ||||||||||| | ||| | | | ||| || | |||||| || Sbjct 293770 ATAGTCTCAATGGCATTAAACAAATACTCAGCCTGTTGTGGATCCTTGATATAAGTGTCA 293829 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 ||||| ||| || | || || |||||||| || || || || || ||||||||| Sbjct 293830 ATCAAGAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAA 293889 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCA 33978 || |||| || | ||| ||||| || | | | || ||||| | || || ||||| | Sbjct 293890 CACTTAGCTTCTGGAATTTGCACCTCGGCAGAGAA--GTTCTCAACCAAGTTCTCATTAA 293947 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT-AAAATATTTTTCGTCT 34037 | || || ||| || ||||| || || | ||| | || || | | || ||| Sbjct 293948 CGATACCGTCAGAAGCGGCAAAGAAGGCAAGAACACGAGAGATGAAGAAACGTTCATTCT 294007 Query 34038 GGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTC 34094 | | | | || |||||||||| | ||| ||||| | ||| | || || | ||| Sbjct 294008 CAT-TCAATCTGTTGTTCCAATCATGCAAATCCTTAGACAAATCAATCTCCTCAGCGGTC 294066 Query 34095 CAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAA 34154 || || || || || ||||| || || | |||||| ||||| || | |||||||||| Sbjct 294067 CAGAAAGAAGCTTCAGCCTTCTTGTATGCCTGCCAGATCTCATGGTACTTGATTGGGAAA 294126 Query 34155 ATAACAAA 34162 | |||||| Sbjct 294127 AGAACAAA 294134 Score = 176 bits (194), Expect = 6e-39 Identities = 646/991 (65%), Gaps = 38/991 (4%) Strand=Plus/Plus Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 ||||| | ||| |||||||||||||||| || || || | | || | ||||| ||| Sbjct 213671 GCACCATGATACATGGTTTCAAAGATCTCTTTGTTAAGTTTGCGAGCCTGAGGGCTGTCA 213730 Query 62739 AATGGATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||||| ||| | | || || || ||| || | ||||||||| |||||| | || || Sbjct 213731 AATGGCAAATGGA-GTGACATGAATAAGTCAGCAAGTCCTTGAACTCCAATAGCAATTGG 213789 Query 62798 TCTATGTCTC---TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62854 | ||| || ||| | || || || ||||| | || || | || ||| || Sbjct 213790 ACGGTGTTTCAAGTTACTTGAC---TCCGCCTCTGGTGTTGGGTAGATACCAACATCGAT 213846 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AA 62913 || || || ||||| || | ||||||||| ||| | |||||| || ||| || Sbjct 213847 AACCTTGTTCAGATTCTTGGTCAATACTTTGACGACAGAGTGTAGTTTGTGATGATCGAA 213906 Query 62914 ATC--GCCCAT-----------CTA--TTACAAACATGTTCAATG--CAACAGATGCCAG 62956 | | | ||| || || ||| | ||| | | ||||||| |||| Sbjct 213907 AACAAGTTCATTATCAACTTCACTTCGTTTCAAGAAAGTTGGAAGAGCAACAGAGGCCAA 213966 Query 62957 ATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 63016 ||||| ||||| ||| | || | ||||| | | ||| || | || Sbjct 213967 GTTACAAACGGCAGTCTCTTCAGGTGATGAGTATTGAACCACTTCACAACACAAGTTCGA 214026 Query 63017 ACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 63076 ||||||| || || ||||| | |||||||||||| | ||||| ||||||||||| || Sbjct 214027 GGACTTGATTGTACCCAAATTCTTCTGATTACTCTTTCTATTACAAGCATCCTTATAGAG 214086 Query 63077 AATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAG 63135 ||||| ||| ||||||||||| ||||| || | || | | ||| | | || ||| Sbjct 214087 CATGAAAGGACCACCAGTTTCAACTTGAGACTCCAAGATTGAGTGCCATAACTTCT-GAG 214145 Query 63136 CCTTTATTATAGA-TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAAC 63194 |||| || | |||| ||||| || | || ||| ||||| | | | || Sbjct 214146 CCTTAATCTTCTTCTTTGCCAATCCTTCCT-TCTCATATTTGTGATACAGTTGAACAAAT 214204 Query 63195 TCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCT 63254 | || || | | | | ||| | |||| ||||| |||| | ||| |||| ||| Sbjct 214205 GCATCACCATACATCTCATTCAAACCAGGAGCATCATCTGGACTAAACAAGCACCATTCT 214264 Query 63255 CCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATC 63313 | || | || ||| || ||| || ||||| || ||||| ||||| ||| || | ||| Sbjct 214265 TCATCTTTCTCAACTTTTTCCATGAATAGATCTGGGATCCATAGAGC-ATAGAACAAATC 214323 Query 63314 TCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCCATAATAT 63372 | | ||| || || ||||| |||||| ||||| | || || |||| | || Sbjct 214324 ACGAGCTCTCATCTCTTCCTTTCCATGATTCTTCCTTAAGTTTAAGAAAT-CCATCACAT 214382 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 ||| |||||| |||||||| || ||||| | | || || | || || || || |||| Sbjct 214383 CAGCATGCCATGGTTCCAAATAGATGGCAAATGCACCTGGTCTCTTATTACCACCTTGAT 214442 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | ||||| || ||||||||| | ||||| | ||| || | ||||||||||| ||| Sbjct 214443 CAACATATCTTGCAGTGTTATTAAACACTCTAAGCATAGGTACGATACCGTTTGAAGTAC 214502 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTC 63552 |||| | |||| || || | ||| ||| | ||| ||| || |||||| || | Sbjct 214503 CATTTGATCCGGCAATGTATGCACCAGTGGATCTAATGTTAGATATATGTAGACCGATAC 214562 Query 63553 CCCCTGCCATTTTAGAGATTAATGCGCA-TCGT-TTTAACGTGTCATAGATGCCTTCTAT 63610 | || || || ||||||| | ||| || | | || || | ||| ||||| || || Sbjct 214563 CACCAGCAGCCTTCGAGATTA--GAGCAGTCTTGTGCAAAGTCTTATATATGCCATCGAT 214620 Query 63611 GCTATCATCGATCATGTTAAGTAGAAAACAG 63641 | ||||| || |||||| |||||| Sbjct 214621 GGAGTCATCTTCTATTCCAAGTAGGAAACAG 214651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817505527360