Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 226 4e-54 seq5 190 3e-43 >seq6 Length=1133955 Score = 226 bits (250), Expect = 4e-54 Identities = 1309/2075 (63%), Gaps = 48/2075 (2%) Strand=Plus/Plus Query 70797 CAAT-GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTT 70855 |||| || |||||||| | || || || || | || | | ||||||||| || || | Sbjct 477784 CAATAGTGAACTGAATAGCAGCAGAAGCAGCCTGGGTTCTCAAATAGTACATACCAGTCT 477843 Query 70856 TTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCG 70914 | | ||| |||| ||||| || |||||| || | || |||| | ||| | Sbjct 477844 TCAAACCCTTCTTCCAACCGTAGAAGTGCATAGAGGTCAACTTACCCATAGTT-GGAGCT 477902 Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974 |||||||| |||| || ||| |||||| ||||| || | | || |||||||| Sbjct 477903 CTAATGTGAATGTTCAAAGATTGAGATTGATCAATGAAAGCAGCACGATCAGCAGCCATA 477962 Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 71033 | ||||| |||||||| | ||| ||||||| || || || || || | ||| ||| Sbjct 477963 TCGATGATAGTCTTTTGAGAAATCTCCCAAACGGTCTTGTACAAATCTTTCAATTCCTT- 478021 Query 71034 TGGAAGGTTTG-TA--TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTC 71090 ||||| ||||| || || ||||| || || ||| | || || | | || || Sbjct 478022 TGGAATGTTTGGTAAGTTTTGAATAGAACCGTTATCAGAGATGATGTGACTCTTCATAGA 478081 Query 71091 TTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAA 71150 |||| ||| | || ||| | | ||| | || || ||||| | || || Sbjct 478082 GTCATCCCAAACACCCAAATCAACCAAATCACGAAGCAAATATGGGTTAACAATCTGGAA 478141 Query 71151 TTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATT 71210 ||| |||| | || | ||||| |||||| ||| || || ||||| | | || || Sbjct 478142 TTCACCAGCAAGGACACGACGAGAGTAAATGTTAGAAGTGTATGGTTCGAAACATTCGTT 478201 Query 71211 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCT 71270 | ||||| ||||||| ||| || ||||| ||||| || || || | | | ||||| Sbjct 478202 GTAACCCAAGATTTGAGAAGTCGAGGCAGTTGGCATTGGAGCAACAAGCAAAGAGTTTCT 478261 Query 71271 AAGACCATG--TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG- 71327 | ||| | ||| || | | | || |||| ||||||| ||| | ||| || || Sbjct 478262 CAAACCGTACTTGACA--ATATCAGCCTTAAGAGTATCCCAATCCCACAAATCGGAAGGC 478319 Query 71328 -TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATG 71386 | | | | || ||| ||| || ||| ||| Sbjct 478320 TTTCTTCCCCAAAGGTCAAACTGAAGCTGA--CCCTTAGAAGCTGGGGAACCTTGGAATG 478377 Query 71387 TATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAA 71446 |||||||| ||||| | ||| || ||| | | ||| || || | | ||||| Sbjct 478378 ATTCGTATGGACCTTCGGACTTGGCGAGCTCAAGAGAGGACTCCAAAGCAGCGTGATAAA 478437 Query 71447 TGGTTTCGAAAATCTTCTTATTGAGATCTTGTGC-TTCCGGGCTATCAAATGGATAATTT 71505 |||| ||||| |||| | || | || | || || | | |||||||| || Sbjct 478438 TGGTCTCGAAGATCTGAATGTTCAATTCCTTAGCCTTTTCAGAT-TCAAATGGCAAACGC 478496 Query 71506 AAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTA 71565 || | ||||| || || ||||| |||||||| || | | || ||||||| |||| || Sbjct 478497 AAAATCATAAAGGCATCAGCTAAACCTTGAACACCGAGGGCAATTGGTCTGTTTCTCATA 478556 Query 71566 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT- 71624 || || || ||||||||| | || || || ||| || || ||| | || | || Sbjct 478557 TTGGAGTTTCTAGCTTCTGGGACTGGGTAGTAGTTACGGTCAATGATTCTGTTCAAGTTC 478616 Query 71625 --TCTGACTA--TT---ACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC-TCCCA 71676 | |||| | || | ||||| | | || | | | || | | | ||| Sbjct 478617 TTTGTGACAACCTTGGCAATTTGATGCAAACGTTCAAAGTTATAAGTCTGAGTGGTACCA 478676 Query 71677 TCTA------TTACAAACAC-GTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACC 71727 || | || ||| | | | ||| |||| || |||| |||||||| || || Sbjct 478677 TCAAGGGATTTTTCAATGAAAGCTGGCAATGCAATGGAGGCCAAGTTACAAACAGCAACT 478736 Query 71728 TCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCT 71787 || | | || | |||| | ||| ||| || | ||| | ||||||| | || Sbjct 478737 TCTTCTGGGTCAGAGTATTCGACAATCTCACAACACAAGTTAGAAGACTTGATCATACCC 478796 Query 71788 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCA 71847 || || | || ||| |||| | |||||| |||||||| ||||| || || ||||||||| Sbjct 478797 AAGTTCTTCTGGTTAGTCTTCTCGTTACAGGCATCCTTGTAAAGCATGAATGGAGTACCA 478856 Query 71848 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTG 71907 || ||| |||| | || | || || | ||| | | ||||||| | | || | Sbjct 478857 GTCTCAGTCTGGGCATCAAGGATTGCATACCACAACTTTTGAGCCTTGACAGTCTT--TC 478914 Query 71908 TATCTCTT--TTCTCTTTCGTATTGTGTATATA-ATCGTTCGAACTCGTCTCCCCAAGCA 71964 || | | |||| | || || | ||| | | | || ||| || || || || Sbjct 478915 TACCACGACCTTCTTTCTCATACTTCTCATAAAGAGCCTT-GAATTCATCACCATAACAG 478973 Query 71965 TTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACT 72024 | | | || || |||||| ||| | | ||| | ||| || |||| | | || Sbjct 478974 TCAGCAAGACCTGGTGCTTCATTTGGAGAGAACAAAGTCCATTCACCATTAGATTCAACA 479033 Query 72025 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 72084 |||| ||| || | |||||| ||||| | ||| || | ||| | | ||| ||| Sbjct 479034 CGTTCCATGAACAAATCAGGGATCCACAATGCTGGGAACAAATCACGAGCTCTGATCTCT 479093 Query 72085 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 72144 || || || ||||||| ||| |||| ||| | | ||||| | ||||| |||||| Sbjct 479094 TCTTTACCGTGATTCTTTCTAATGTCGATGAAATCAAAGATATCTGCGTGCCATGGTTCC 479153 Query 72145 AAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 72204 || || | ||| | | || || | ||||| || || || || | ||| | ||| ||| Sbjct 479154 AAATAAAGGGCAAATGCACCAGGTCTCTTGTTACCACCTTGGTCGACGTAACGAGCAGTG 479213 Query 72205 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 72264 || ||| | || | | ||||||||| | ||| || || | ||| || || || | || Sbjct 479214 TTGTTAAAGACACGAACCATTGGAATCAAACCGTTAGAAGTACCGTTAGTACCAGCAATG 479273 Query 72265 TAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 72324 || || | || | || || || || ||| || || || || | || ||| Sbjct 479274 TAAGAGCCTGTAGCTCTAACGTTATGGATGTGTAAACCGATACCACCAGCGGTCTTGGAG 479333 Query 72325 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 || || || ||| |||| || || |||||||| ||||| || ||| || |||| Sbjct 479334 ATCAAGGCACATTGTTTCAAAGTCTCATAGATACCCTCGATGGAATCTTCTCTCATAGCC 479393 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 | || ||||| ||||| || | | || || || || || || || |||||| Sbjct 479394 ACAAGGAAACAAGAGGACATCTGTGGGTGTGGGGTACCAGCGTTGAACAAAGTTGGAGAA 479453 Query 72445 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 72504 ||||| || || || | ||||||| || || || ||||||||| |||||| ||||| Sbjct 479454 GCGTGGGTGAAGTATCTCTCAGACATGAGGTTATAAGTCTCAATAACTGATTTAATATCT 479513 Query 72505 CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 | ||| || || | ||||| | ||| | || |||||| || | |||| ||| || Sbjct 479514 CTACCATGGATACCGATAGCGACTCTCATGATCAAATGCTGTGGACGTTCAGCGACTTTA 479573 Query 72565 TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TG 72622 ||| | ||||||||| ||| | ||||| || || |||||||| ||||| || || Sbjct 479574 CCATTAACACGCAACAAGTAAGATCTCTCCAATGTCTTGAAACCAAAGTAGTTATAGTTG 479633 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 ||| |||| ||||| || || | || | | | || || | | | ||| || | Sbjct 479634 AAA--TCTCTATCGTAGATGATGGCAGAGTCCAACTCGTCTTTGAACTCTTGAACAATGT 479691 Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 ||| | ||| || | ||||||||||| | | || || |||| |||||| Sbjct 479692 -CATAAGTTTCCTTAGACAACATCGGAGAATGGAGATCGGTCTTTGGGTTAATGTAGTTG 479750 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | || || | || | || |||| | |||| ||| || | ||| || | | Sbjct 479751 TAAAGCTCTTCGACAACAGAAGAGAACTGTTTAGTGGTTTGCTTATGCAAATTAGAGATG 479810 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || ||||| || |||| | | ||||| |||||||| Sbjct 479811 GCAATTCTAGCAGCTAAAGTAGCATAGTCTGGATG 479845 >seq5 Length=1593029 Score = 190 bits (210), Expect = 3e-43 Identities = 406/605 (67%), Gaps = 6/605 (1%) Strand=Plus/Plus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 ||||| ||||| |||||| || || || ||||| ||| ||||| | | ||| || Sbjct 293530 AAATGAGCAAACAACAAACAGGCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAAC 293589 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || || || || || | || ||||| | || | ||| || | ||| || ||||| ||| Sbjct 293590 TCATTAGAGAAAGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCA 293649 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || || ||||| |||||||| ||||| || || |||||||||| ||||||||| || | Sbjct 293650 AAGGAACCAGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCGAAC 293709 Query 42227 CCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 ||| |||| ||||| | ||||||||| |||||||| || | ||| || Sbjct 293710 AAGGCTTCTTCATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTAATACATGGA 293769 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 || || || ||||||||||| | ||| | | | ||| || | ||| || || Sbjct 293770 ATAGTCTCAATGGCATTAAACAAATACTCAGCCTGTTGTGGATCCTTGATATAAGTGTCA 293829 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 ||||| ||| || | || || |||||||| || || || || || ||||||||| Sbjct 293830 ATCAAGAGAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAA 293889 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 || | || || | || || || || | | | || ||| | || || || || || Sbjct 293890 CACTTAGCTTCTGGAATTTGCACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCATTAACG 293949 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || |||||| || ||||| || || | ||| | || || | ||| | | Sbjct 293950 ATACCGTCAGAAGCGGCAAAGAAGGCAAGAACACGAGAGATGAAGAAACGTTCATTCTCA 294009 Query 42524 GTTAAT---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAA 42580 | ||| || |||||||||| | ||| ||||| | ||| | || || | ||||| Sbjct 294010 TTCAATCTGTTGTTCCAATCATGCAAATCCTTAGACAAATCAATCTCCTCAGCGGTCCAG 294069 Query 42581 AATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 || || ||||| ||||| || || | |||||| ||||| || | |||||||||| | Sbjct 294070 AAAGAAGCTTCAGCCTTCTTGTATGCCTGCCAGATCTCATGGTACTTGATTGGGAAAAGA 294129 Query 42641 ACAAA 42645 ||||| Sbjct 294130 ACAAA 294134 Score = 174 bits (192), Expect = 2e-38 Identities = 607/924 (66%), Gaps = 40/924 (4%) Strand=Plus/Plus Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || |||| ||| |||||||| || |||| || || || | | || | ||||| ||| Sbjct 213671 GCACCATGATACATGGTTTCAAAGATCTCTTTGTTAAGTTTGCGAGCCTGAGGGCTGTCA 213730 Query 71494 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 ||||| ||| | | || || || ||| || | ||||||||| |||||| | || || Sbjct 213731 AATGGCAAATGGA-GTGACATGAATAAGTCAGCAAGTCCTTGAACTCCAATAGCAATTGG 213789 Query 71553 TCTGTGTCTC---TTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 71609 | |||| || ||| | || || || ||||| | || || | || ||| || Sbjct 213790 ACGGTGTTTCAAGTTACTTGAC---TCCGCCTCTGGTGTTGGGTAGATACCAACATCGAT 213846 Query 71610 AATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGA------AA 71663 || || || ||||| || | ||||||||| ||| | ||||||| || || Sbjct 213847 AACCTTGTTCAGATTCTTGGTCAATACTTTGACGACAGAGTGTAGTTTGTGATGATCGAA 213906 Query 71664 ATCAA-------ATC----TCCCATCTATTACAAACACGTTC-AAG-GCAACAGATGCCA 71710 | ||| ||| || | || || ||| | ||| ||| |||||||| |||| Sbjct 213907 AACAAGTTCATTATCAACTTCACTTCGTTT-CAAGAAAGTTGGAAGAGCAACAGAGGCCA 213965 Query 71711 GATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTAC 71770 ||||||||||| ||| | || | ||||| | | |||| || | || Sbjct 213966 AGTTACAAACGGCAGTCTCTTCAGGTGATGAGTATTGAACCACTTCACAACACAAGTTCG 214025 Query 71771 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 71830 ||||||| || || ||||| | |||||||||||| | ||||| ||||||||||| | Sbjct 214026 AGGACTTGATTGTACCCAAATTCTTCTGATTACTCTTTCTATTACAAGCATCCTTATAGA 214085 Query 71831 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA-GACGACTCGA 71889 | || || ||| ||||||||||| ||||| || | || | | ||| || || || Sbjct 214086 GCATGAAAGGACCACCAGTTTCAACTTGAGACTCCAAGATTGAGTGCCATAACTTCT-GA 214144 Query 71890 GCCTTTATTATATTC-TTGTATCTCTTTTCTCTTTCGTA-TTGTGTATATAATCGTTCGA 71947 ||||| || | ||| ||| || || || | || || ||||| ||| | | | | | Sbjct 214145 GCCTTAATCTTCTTCTTTGCCAATCCTTCCT-TCTCATATTTGTG-ATACAGTTGAACAA 214202 Query 71948 ACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 | | || || | | | || |||||| |||| |||| | ||| |||| | Sbjct 214203 ATGCATCACCATACATCTCATTCAAACCAGGAGCATCATCTGGACTAAACAAGCACCATT 214262 Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGA 72066 || |||| | | ||| || ||| || ||||| || ||||| ||||| ||| || | | Sbjct 214263 CTTCATCTTTCTCAACTTTTTCCATGAATAGATCTGGGATCCATAGAGC-ATAGAACAAA 214321 Query 72067 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAAT 72125 || | | ||| ||| || ||||| |||||| ||||| | | ||| |||| | Sbjct 214322 TCACGAGCTCTCATCTCTTCCTTTCCATGATTCTTCCTTAAG-TTTAAGAAATCCATCAC 214380 Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185 ||||| |||||| |||||||| || ||||| | | || || | || || || || || Sbjct 214381 ATCAGCATGCCATGGTTCCAAATAGATGGCAAATGCACCTGGTCTCTTATTACCACCTTG 214440 Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245 ||| | ||||| || ||||||||| | ||||| | ||| || | ||||| || || | Sbjct 214441 ATCAACATATCTTGCAGTGTTATTAAACACTCTAAGCATAGGTACGATACCGTTTGAAGT 214500 Query 72246 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT-GCTAATTGATAGACCTA 72304 |||||| | |||| || || ||| ||| | ||| || | || || |||||| | Sbjct 214501 ACCATTTGATCCGGCAATGTATGCACCAGTGGATCTAATGTTAGATATATG-TAGACCGA 214559 Query 72305 TTCCCCCTGCCATTTTAGAGATTA 72328 | || || || || ||||||| Sbjct 214560 TACCACCAGCAGCCTTCGAGATTA 214583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139099329120