Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 226 7e-54 seq1 134 3e-26 seq4 105 2e-17 >seq5 Length=1593029 Score = 226 bits (250), Expect = 7e-54 Identities = 395/567 (70%), Gaps = 16/567 (3%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 ||||| |||| | |||||||| ||||| | || || | ||| ||||| | || || Sbjct 294092 TACAAGAAGGCTGAAGCTTCTTTCTGGACCGCTGAGGAGATTGATTTGTCTAAGGATTTG 294033 Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861 |||||||| || | || |||| ||| | || || ||| | ||||||| Sbjct 294032 CATGATTGGAACAACAGATTGAATGAGAATGAACGTTTCTTCATCTCTCGTGTTCTTGCC 293973 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 || ||||| | | ||| ||||||||||| || || | || ||||| |||| | ||| Sbjct 293972 TTCTTTGCCGCTTCTGACGGTATCGTTAATGAGAACTTGGTTGAGAACTTCTCTGCCGAG 293913 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| ||||| | ||||| ||||| ||||| || || || || ||||| Sbjct 293912 GTGCAAATTCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATCATGATGGAGAACATTCAC 293853 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGA 269041 || |||| ||| ||| || || || |||||||| | ||| | || | | | || Sbjct 293852 TCTGAGACATACTCTCTCTTGATTGACACTTATATCAAGGAT--CCACAACAGGCTGAG- 293796 Query 269042 CTATTTTCTT-----CTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTC 269096 ||||| || | ||||| |||| ||| | | || || |||| |||||| Sbjct 293795 -TATTTGTTTAATGCCATTGAGA-CTATTCCATGTATTAAGAAGAAGGCTGATTGGGCTT 293738 Query 269097 TGAAATGGATAAACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTG 269153 ||| |||||| |||| | ||||| ||| || || | ||||| |||||||||| Sbjct 293737 TGAGATGGATTGCCGATGAAGAAGCCTTGTTCGGTGAGAGACTTGTTGCCTTTGCCGCTG 293678 Query 269154 TAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCC 269213 | |||||||| ||||| || || || |||||| |||| || ||||||||||| ||||| Sbjct 293677 TTGAAGGTATCTTCTTCTCTGGTTCCTTTGCCTCTATTTTCTGGTTGAAGAAGAGAGGTT 293618 Query 269214 TTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCG 269273 | |||||||| || ||||||||||| || ||||| || | || |||||||| ||| | Sbjct 293617 TGATGCCAGGTTTGACTTTCTCTAATGAGTTGATTTGCCGTGATGAAGGTTTGCACACTG 293558 Query 269274 ACTTCGCTTGTTTATTATTTACTAATT 269300 |||| || ||||| || ||| || ||| Sbjct 293557 ACTTTGCCTGTTTGTTGTTTGCTCATT 293531 >seq1 Length=3147266 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || | |||||||| || || || || || ||| Sbjct 843668 GTGGACTCCTTCTGAATGTTGTAGTCGGACAAGGTTCTACCATCCTCAAGCTGCTTACCA 843609 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || ||||| || || ||||| || || |||||||| | || Sbjct 843608 GCAAAGATAAGTCTCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTAGACTTA 843549 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | ||| ||||| |||||||||||||||||||| | || Sbjct 843548 ACGTTGTCAATAGTGTCAGAGGATTCAACCTCGAGTGTAATAGTCTTACCAGTCAAGGTC 843489 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 843488 TTGACAAAGATCTGCAT 843472 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || |||||||| ||||| || || || || Sbjct 843440 GTTGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCTACCATCTTCAAGCTGCTTACCG 843381 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || ||||| || ||||| || || || || || ||||| ||||| | || Sbjct 843380 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTAGACTTA 843321 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| |||||||||||||||||||| | || Sbjct 843320 ACGTTGTCAATAGTATCGGAGGACTCAACCTCGAGTGTAATAGTCTTACCAGTCAAGGTC 843261 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 843260 TTCACGAAAATTTGCAT 843244 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || ||||| || ||||| || || || || Sbjct 843212 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCTGCCATCTTCGAGCTGCTTACCG 843153 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||| || ||||| || || || || || ||||||||||| | || Sbjct 843152 GCGAAGATAAGTCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 843093 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || || ||||| ||||||||||||||||| || | || Sbjct 843092 ACGTTGTCAATGGTGTCGGAAGACTCAACCTCAAGTGTAATAGTCTTACCGGTCAAGGTC 843033 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 843032 TTCACGAAAATTTGCAT 843016 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || |||||||| || || || || || || Sbjct 842984 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTTCTACCATCCTCAAGCTGCTTACCG 842925 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||||| || || ||||| |||||||| || || || || || ||||||||||| Sbjct 842924 GCAAAGATAAGTCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGAATCTT 842872 >seq4 Length=1873953 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || || || | ||| || || || || ||||| || || |||||| Sbjct 1428443 ATACCACCTCTCAATCTGAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCA 1428384 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||||||||| || || || || || || || || || ||||| || ||||| Sbjct 1428383 GAAAGGGTTCTACCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCTCTGCTGGTCAGGT 1428324 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| | || || || || | ||| || | || Sbjct 1428323 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCA 1428264 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| | ||||| |||||||| || Sbjct 1428263 ACCTCCAAGGTAATGGTCTTACCGGT 1428238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398222972496