Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 136 3e-27 seq7 111 1e-19 seq4 91.5 1e-13 >seq1 Length=3147266 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || |||||||| || | || ||||| || || | || Sbjct 843016 ATGCAAATTTTCGTGAAGACCTTGACCGGTAAGACTATTACACTTGAGGTTGAGTCTTCC 843075 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| |||||||||||||| ||||| || || Sbjct 843076 GACACCATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCACCTGACCAG 843135 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || ||||| || ||| | || ||| | | ||| ||||||| |||||| Sbjct 843136 CAGAGACTTATCTTCGCCGGTAAGCAGCTCGAAGATGGCAGAACCCTCTCCGACTACAAC 843195 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || || |||||| ||||| | || ||| Sbjct 843196 ATCCAGAAGGAGTCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 843243 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || ||||| || | || || || || || || || Sbjct 843244 ATGCAAATTTTCGTGAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAGTCCTCC 843303 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | | || || || || |||||||||||||| ||||| || || Sbjct 843304 GATACTATTGACAACGTTAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 843363 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||||| || ||| | || ||| | ||| ||||||| |||||| Sbjct 843364 CAGAGACTTATCTTTGCCGGTAAGCAGCTTGAAGATGGTAGAACCCTCTCCGACTACAAC 843423 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || ||| | || || |||||| ||||| | || ||| Sbjct 843424 ATTCAGAAGGAGTCAACCCTTCACTTGGTTTTGAGATTGAGAGGTGGT 843471 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || | || || || || ||| || | Sbjct 843472 ATGCAGATCTTTGTCAAGACCTTGACTGGTAAGACTATTACACTCGAGGTTGAATCCTCT 843531 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || |||||||||||||| ||||||||||| || || Sbjct 843532 GACACTATTGACAACGTTAAGTCTAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 843591 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || ||| | |||||| | ||| | ||||| |||||| Sbjct 843592 CAGAGACTTATCTTTGCTGGTAAGCAGCTTGAGGATGGTAGAACCTTGTCCGACTACAAC 843651 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || ||||| | || || || ||| ||||| | || |||||| Sbjct 843652 ATTCAGAAGGAGTCCACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTTTT 843702 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||||||||| || || ||||| || | ||||| |||||||| || Sbjct 842872 AAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAGCAGAGACTTATCTTTGCCGGTAAG 842931 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| | ||| | ||||| ||||||||||| || || ||||| | || Sbjct 842932 CAGCTTGAGGATGGTAGAACCCTTTCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 842991 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| ||||| | || ||| Sbjct 842992 TTGGTCTTGAGATTGAGAGGTGGT 843015 >seq7 Length=431226 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || |||||||| || | || ||||| || ||||| | || || || | Sbjct 274915 AAGATGCAGATCTTTGTTAAGACCCTCACGGGTAAGACCATCACTTTGGAGGTTGAGTCT 274974 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | ||| || |||| || || || ||||| || ||||| ||||| || Sbjct 274975 TCCGACACTATTGACAATGTCAAGTCCAAGATCCAGGACAAAGAAGGTATCCCACCTGAC 275034 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | ||||| |||||||| || ||| | |||||| | ||| | || || ||| Sbjct 275035 CAGCAGAGACTTATCTTTGCCGGTAAGCAGCTTGAGGATGGTAGAACCCTTTCTGACTAC 275094 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || |||||| | || || || | ||||| | || ||| Sbjct 275095 AACATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGATTGAGAGGTGGT 275145 >seq4 Length=1873953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| ||||| || || |||||||| || | || | || || || || | || ||| | Sbjct 1428222 TTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCCTCTGACACCAT 1428281 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || |||||||||||||| ||||| || || || | || Sbjct 1428282 TGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGAGACT 1428341 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 ||| || ||||| || ||| | ||||| | ||| | || || |||||||| || || Sbjct 1428342 TATCTTCGCCGGTAAGCAGCTCGAGGACGGTAGAACCCTTTCTGACTACAACATCCAGAA 1428401 Query 22407 AGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| | ||||| || | ||||| | || ||| Sbjct 1428402 GGAGTCCACTTTGCATTTGGTCCTCAGATTGAGAGGTGGT 1428441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727938614780