Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-41 seq5 120 4e-22 >seq6 Length=1133955 Score = 183 bits (202), Expect = 4e-41 Identities = 680/1052 (65%), Gaps = 39/1052 (4%) Strand=Plus/Plus Query 116161 GCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 116220 || |||||||| || ||||| || || || |||| | |||| |||| || || ||| Sbjct 478425 GCAGCGTGATAAATGGTCTCGAAGATCTGAATGTTCAATTCCTTAGCCTTTTCAGATTCA 478484 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 || | | ||| | | ||||| |||| || | |||||| ||||||||| ||||||| Sbjct 478485 AATGGCAAACGCAAAATCATAAAGGCATCAGCTAAACCTTGAACACCGAGGGCAATTGGT 478544 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAAC 116339 | | ||||||||| || |||| ||| ||| || || || | || | || || | Sbjct 478545 CTGTTTCTCATATTGGAGTTTCTAGCT-TCTGGGACTGGGTAGTAGTTACGGTCAATGAT 478603 Query 116340 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 116399 || || | || || ||||||||||| | |||| ||| | ||| | | | || | Sbjct 478604 TCTGTTCAAGTTCTTTGTGACAACCTTGGCAATTTGATGCAAACGTTCAAAGTTATAAGT 478663 Query 116400 GCGAGTC---------------TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 |||| | |||| ||| | || || | || || || |||| Sbjct 478664 CTGAGTGGTACCATCAAGGGATTTTTCAATGAAAG-CT--GGCAATGCAATGGAGGCCAA 478720 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 ||||| |||| || || |||| ||| || | ||| || |||||| || || Sbjct 478721 GTTACAAACAGCAACTTCTTCTGGGTCAGAGTATTCGACAATCTCACAACACAAGTTAGA 478780 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 | ||| || | ||||||||||| || || | ||| |||||| ||||||||||| || Sbjct 478781 AGACTTGATCATACCCAAGTTCTTCTGGTTAGTCTTCTCGTTACAGGCATCCTTGTAAAG 478840 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA-TACATCGGCGG 116623 ||| |||| || || ||||| || |||| | || || || | ||| || | | | Sbjct 478841 CATGAATGGAGTACCAGTCTCAGTCTGGGCATCAAGGATTGCATACCACAACTTTTGAGC 478900 Query 116624 CTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACT 116683 || | ||||| | | || || || | ||| ||||| || || |||| || | Sbjct 478901 CTTG-ACAGTCTTTCTACCACGACCTTCTTTCTCATACTTCTCATAAAGAGCCTTGAATT 478959 Query 116684 CTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTG 116741 | ||||| |||| || | || |||||||| | || |||| |||| | || ||||| Sbjct 478960 CATCACCATAACAG--TCAGCAAGACCTGGTGCTTCATTTGGAGAGAACAAAGTCCATTC 479017 Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 |||| ||||| || | |||||| | || |||||||| | || | ||| | ||| Sbjct 479018 ACCATTAGATTCAACACGTTCCATGAACAAATCAGGGATCCACAATGCTGGGAACAAATC 479077 Query 116802 CCGA-CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 116860 ||| | || | ||||| | || ||||| | | || | || || | ||||| Sbjct 479078 ACGAGCTCTGATC-TCTTCTTTACCGTGATTCTTTCTAATGTCGATGAAATCAAAGATAT 479136 Query 116861 CCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCT 116914 | |||||||| ||||||| || | || | || || | |||| |||| | | Sbjct 479137 CTGCGTGCCATGGTTCCAAATAAAGGGCAAATGCACCAGGTCTCTTG---TTACCACCTT 479193 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| || || | || || |||||| || |||| ||||||||| | ||| | ||| Sbjct 479194 GGTCGACGTAACGAGCAGTGTTGTTAAAGACACGAACCATTGGAATCAAACCGTTAGAAG 479253 Query 116975 GGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 || || || || ||| ||| | || | ||||| || | |||||||| | ||| Sbjct 479254 TACCGTTAGTACCAGCAATGTAAGAGCCTG-TAGCTCTAACGTTATGGATGTGTAAACCG 479312 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 ||||| || || ||| ||||| || || | | | | | | ||||| || ||| Sbjct 479313 ATACCACCAGCGGTCTTGGAGATCAAGGCACATTGTTTCAAAGTCTCATAGATACCCTCG 479372 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 117153 || || || | | | || | ||||| || ||||| ||||| ||| |||||| Sbjct 479373 ATGGAATCTTCTCTCATAGCCACAAGGAAACAAGAGGACATCTGTGGGTGTGGGGTACCA 479432 Query 117154 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 |||||||| | ||||| | |||||| |||| Sbjct 479433 GCGTTGAACAAAGTTGGAGAAGCGTGGGTGAA 479464 >seq5 Length=1593029 Score = 120 bits (132), Expect = 4e-22 Identities = 194/279 (70%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 163344 ATTGTTTTGCCAGTAGGTGTGTACGGTCGCGTGGCACCAAGATCTGGTCTCGCTGTGAAG 163403 |||||| ||||||||| || ||||| || || ||| | || ||| | || |||||| Sbjct 980234 ATTGTT---CCAGTAGGTACCTATGGTCGTGTTGCTCCACGTTCCGGTTTGGCCGTGAAG 980290 Query 163404 AGCGGTATCCAAGTTGGTGCGGGTGTTGTGGATCCAGACTACACAGGTGAAGTCAAAGTC 163463 ||||||| | ||||| ||||| || ||| ||||||||| ||||||||| || || Sbjct 980291 CACGGTATCTCAACAGGTGCCGGTGTCGTTGATGCAGACTACAGAGGTGAAGTGAAGGTT 980350 Query 163464 GTTCTCTTCAATCACGGACACATGGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAA 163523 ||||||||||| ||| | ||| ||| ||| |||| ||||| || | ||||| || Sbjct 980351 GTTCTCTTCAACCACAGTGACAAGGACTTCTCAATCGCTAAGGGTGACAGAATCGCTCAG 980410 Query 163524 CTCATCTTAGAGAGGTGTGAGACACCCCAAGTTGAAGAAATTGGTGCGG------TTGAG 163577 ||| | || |||| | || | | | || | || || |||| | || Sbjct 980411 CTCGTTTTGGAGAAGATTGTCAATGCTGAGATTCAGGAGATCACAGCGGAGGAGCTCGAT 980470 Query 163578 GAGACCGAGAGAGGTTCGGGTGGATTCGGTTCTACAGGT 163616 | || ||||||||| | ||||| ||||||||||| ||| Sbjct 980471 AACACTGAGAGAGGTGCAGGTGGTTTCGGTTCTACTGGT 980509 Score = 93.3 bits (102), Expect = 5e-14 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||| || |||||| | || | ||||| ||||| || |||| Sbjct 293551 GCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAACTCATTAGAGAAAGTCAAACCT 293610 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | ||| | |||||||||||||||||| | ||| || |||||||||||||| Sbjct 293611 GGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCAAAGGAACCAGAGAAGAAGATA 293670 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 || || ||| || || |||| || | ||| | || || | ||| | ||| Sbjct 293671 CCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCGAACAAG-GCTTCTTCATCGGCAAT 293729 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| ||| ||||| | ||||| |||| |||||||| | |||| || || | ||| Sbjct 293730 CCATCTCAAAGCCCAATCAGCCTTCTTCTTAATACATGGAATAGTCTCAATGGCATTAAA 293789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920