Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 239 5e-58 seq6 221 1e-52 >seq5 Length=1593029 Score = 239 bits (264), Expect = 5e-58 Identities = 416/599 (69%), Gaps = 7/599 (1%) Strand=Plus/Plus Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||||| |||||| ||||| ||| || | || || || | | ||||| |||||||| Sbjct 293538 AAACAACAAACAGGCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAACTCATTAGA 293597 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 || || ||||| ||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 293598 GAAAGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCAAAGGAACC 293657 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CAT 19129 ||| ||||| |||||||| || || ||||| ||||| ||||| || || ||| || | | Sbjct 293658 AGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCG-AACAAGGCTT 293716 Query 19130 CATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | | || ||||||| ||| ||||||||||||||||| || | |||||| || |||| Sbjct 293717 CTTCATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTAATACATGGAATAGTCT 293776 Query 19190 CTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATA 19249 | || | |||||| | |||| | || | || ||| || | ||| | || ||||| | Sbjct 293777 CAATGGCATTAAACAAATACTCAGCCTGTTGTGGATCCTTGATATAAGTGTCAATCAAGA 293836 Query 19250 AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG 19309 | ||| | || || ||||| || || || || || || ||||| ||||| | | Sbjct 293837 GAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAACACTTAG 293896 Query 19310 CTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369 |||||| || || || || | | || | || ||||| || |||||||| || || | Sbjct 293897 CTTCTGGAATTTGCACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCATTAACGATACCGT 293956 Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAAT 19428 || ||| ||||| || || | ||| | || || |||| ||| | | ||| Sbjct 293957 CAGAAGCGGCAAAGAAGGCAAGAACACGAGAGATGAAGAAACGTTCATTCTCA-TTCAAT 294015 Query 19429 ---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | |||||||||| | ||| ||||| ||||| | || ||| | ||||| |||||| Sbjct 294016 CTGTTGTTCCAATCATGCAAATCCTTAGACAAATCAATCTCCTCAGCGGTCCAGAAAGAA 294075 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || || || || || | ||| || ||| | || | || || || | |||||| Sbjct 294076 GCTTCAGCCTTCTTGTATGCCTGCCAGATCTCATGGTACTTGATTGGGAAAAGAACAAA 294134 Score = 237 bits (262), Expect = 2e-57 Identities = 393/561 (70%), Gaps = 6/561 (1%) Strand=Plus/Plus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||||||||||| | |||||| | | ||||| || ||||| || ||||| Sbjct 214031 TTGATTGTACCCAAATTCTTCTGATTACTCTTTCTATTACAAGCATCCTTATAGAGCATG 214090 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 ||||| |||||||| | ||||| || | ||| || | ||| | || |||||| Sbjct 214091 AAAGGACCACCAGTTTCAACTTGAGACTCCAAGATTGAGTGCCATAACTTCTGAGCCTTA 214150 Query 48078 ATAA-CAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 || | || | | | | || | || ||||| ||| | | ||||| |||| Sbjct 214151 ATCTTCTTCTTTGCCAATCCT-TCCTTCTCATATTTGTGATACAGTTGAACAAATGCATC 214209 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 ||||||| | || || |||||| |||| |||| | ||| |||| || ||||| Sbjct 214210 ACCATACATCTCATTCAAACCAGGAGCATCATCTGGACTAAACAAGCACCATTCTTCATC 214269 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAG 48255 || | ||| | ||| |||| |||||| ||||| ||||| ||| || ||||| | || Sbjct 214270 TTTCTCAACTTTTTCCATGAATAGATCTGGGATCCATAGAGC-ATAGAACAAATCACGAG 214328 Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTT-TTAAGTTCAAGAAAGTCCATTATATCAGCA 48314 ||| | ||||| || ||| |||| | ||||||| |||||| ||||| | ||||||| Sbjct 214329 CTCTCATCTCTTCCTTTCCATGATTCTTCCTTAAGTTTAAGAAA-TCCATCACATCAGCA 214387 Query 48315 TGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATA 48374 ||||||||||| ||||| || || | | ||||||||| |||||||| |||||||| | | Sbjct 214388 TGCCATGGTTCCAAATAGATGGCAAATGCACCTGGTCTCTTATTACCACCTTGATCAACA 214447 Query 48375 TATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTG 48434 ||||| ||||| || ||| | ||||| | ||| || || ||||| ||||| ||||||| Sbjct 214448 TATCTTGCAGTGTTATTAAACACTCTAAGCATAGGTACGATACCGTTTGAAGTACCATTT 214507 Query 48435 GTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCT 48494 | ||| | ||| || ||| | | ||| || ||| || | ||| |||||||| Sbjct 214508 GATCCGGCAATGTATGCACCAGTGGATCTAATGTTAGATATATGTAGACCGATACCACCA 214567 Query 48495 GCCATTTTAGATATTAGAGCA 48515 || || || ||||||||| Sbjct 214568 GCAGCCTTCGAGATTAGAGCA 214588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 47018 TAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAA 47077 ||| ||||||||||||||||||| ||| |||| |||||||||||||| ||| | Sbjct 213061 TAAGTAATACATACCAGTCTTTAGTCCTTGCTTCCAGCCATAGAAATGCATCGAAGTGAG 213120 Query 47078 -TTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATG 47136 ||| | | || | || || ||||| || || ||||| ||||||||||||| Sbjct 213121 CTTTCGGA-AAGTTGGATCCCTCATATGGATGTTTGTGGATTGGGATTGATCAATAAATG 213179 Query 47137 CACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTAT 47196 ||||| || || ||| | |||||| | | |||||| || ||||||||||| || Sbjct 213180 GTCCTCTCTCGGCACACATCTGTAAAATCCCACGTTGTGGGATTTCCCATACTGTACGAT 213239 Query 47197 AAATTTGTTTAATGTCTTCTGGGA 47220 ||| |||| | || ||||||| Sbjct 213240 GAATCAGTTTCAAGTTCTCTGGGA 213263 >seq6 Length=1133955 Score = 221 bits (244), Expect = 1e-52 Identities = 863/1342 (64%), Gaps = 47/1342 (4%) Strand=Plus/Plus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||| || || || | ||||| ||||| || || | ||| | || |||| | || || Sbjct 478706 TGCAATGGAGGCCAAGTTACAAACAGCAACTTCTTCTGGGTCAGAGTATTCGACAATCTC 478765 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 | ||| | ||| | | ||||| ||||||| || | || ||| | | |||||| Sbjct 478766 ACAACACAAGTTAGAAGACTTGATCATACCCAAGTTCTTCTGGTTAGTCTTCTCGTTACA 478825 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTT 48058 || |||||||||||||| || || || ||||| || |||| | |||| ||| | | Sbjct 478826 GGCATCCTTGTAAAGCATGAATGGAGTACCAGTCTCAGTCTGGGCATCAAGGATTGCATA 478885 Query 48059 CCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATA 48118 ||| | | |||||| | | |||| | | || | || || || ||| Sbjct 478886 CCACAACTTTTGAGCCTTGACAGTCTTTCTACCACGACCTTCTTTCTCATACTTCTCATA 478945 Query 48119 TAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACA 48177 | || |||||||| ||||| ||| | | | | || || |||||| ||| | | Sbjct 478946 AAGAGCCTTGAATTCATCACCATA-ACAGTCAGCAAGACCTGGTGCTTCATTTGGAGAGA 479004 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 ||| | ||| || ||| | || || | ||| || | ||| || ||||| | | Sbjct 479005 ACAAAGTCCATTCACCATTAGATTCAACACGTTCCATGAACAAATCAGGGATCCACAATG 479064 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || || ||||| | || ||| | ||||| || || |||| || ||| || | | Sbjct 479065 CTGGGAACAAATCACGAGCTCTGATCTCTTCTTTACCGTGATTCTTTCTAATGTCGATGA 479124 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | ||||| || ||||||||||| ||||| | || | | |||| |||| || | Sbjct 479125 AATCAAAGATATCTGCGTGCCATGGTTCCAAATAAAGGGCAAATGCACCAGGTCTCTTGT 479184 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 |||| ||||| || | || | ||||| |||||| | || | | |||||| | | || Sbjct 479185 TACCACCTTGGTCGACGTAACGAGCAGTGTTGTTAAAGACACGAACCATTGGAATCAAAC 479244 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476 | || || |||| || || || | ||| ||| || ||||||| | ||| || | Sbjct 479245 CGTTAGAAGTACCGTTAGTACCAGCAATGTAAGAGCCTGTAGCTCTAACGTTATGGATGT 479304 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || ||| |||||||| || | || || || | ||||| |||| | || ||||| Sbjct 479305 GTAA-ACCGATACCACCAGCGGTCTTGGAGATCAAGGCACATTGTTTCAAAGTCTCATAG 479363 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || || || ||| ||| ||||| | || |||||| ||||| || || || Sbjct 479364 ATACCCTCGATGGAATCTTCTCTCATAGCCACAAGGAAACAAGAGGACATCTGTGGGTGT 479423 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | || || || |||||||| || || | || || |||| || | | Sbjct 479424 GGGGTACCAGCGTTGAACAAAGTTGGAGAAGCGTGGGTGAAGTATCTCTCAGACATGAGG 479483 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 ||||| || |||||||| || | ||||| | ||| ||||| |||| || | ||| Sbjct 479484 TTATAAGTCTCAATAACTGATTTAATATCTCTACCATGGATACCGATAGCGACTCTCATG 479543 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | || || || || | |||| | | ||| ||| | ||| | || ||| | ||| Sbjct 479544 ATCAAATGCTGTGGACGTTCAGCGACTTTACCATTAACACGCAACAAGTAAGATCTCTCC 479603 Query 48777 AATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGA-- 48832 ||||| || |||||||| ||||| || ||||| || |||| | || || | || Sbjct 479604 AATGTCTTGAAACCAAAGTAGTTATAGTTGAAA--TCTCTATCGTAGATGATGGCAGAGT 479661 Query 48833 --ATTTATTCTTT----CCTT-----ATGT------TT---ATATACTACATC----CAT 48868 | | ||||| ||| |||| || || || ||||| || Sbjct 479662 CCAACTCGTCTTTGAACTCTTGAACAATGTCATAAGTTTCCTTAGACAACATCGGAGAAT 479721 Query 48869 -TACAT---TTTTTGATATAATTGATTCCTTGTAAAGATCTTCTACAACATCACTAAATA 48924 | || | |||| |||| | |||||||| ||||| |||||| | || Sbjct 479722 GGAGATCGGTCTTTGGGTTAAT---GTAGTTGTAAAGCTCTTCGACAACAGAAGAGAACT 479778 Query 48925 ttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAAT 48984 ||| | |||| ||||| | |||||| || | |||||||||||||| ||||||| | Sbjct 479779 GTTTAGTGGTTTGCTTATGCAAATTAGAGATGGCAATTCTAGCAGCTAAAGTAGCATAGT 479838 Query 48985 CTGGATGAATTGTTGTACATGT-ACTAGATATTTCTGCTGCTAATATATCTAATTCTTTA 49043 ||||||||| || || ||| | | | | | || || || || |||| || || || Sbjct 479839 CTGGATGAACAGTAGT-CATATAAGCACAAGTCTCAGCAGCCAAGTTATCCAACTCGATA 479897 Query 49044 GTAGTTACACCTGTATATATTCCTTGAATAA--CTTTCATTGCTATATTTACTGGATCTA 49101 || || |||||| ||| | || || | |||| | || || || || | ||| | Sbjct 479898 GTGGTGACACCTTCATAAACACCAGAGATGATTCTTTGAGTG--ATCTTAACGGCATCAA 479955 Query 49102 TATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACA 49161 |||| || ||| || |||||||||| | | ||||||| |||||| ||||||||| Sbjct 479956 TATGTTCTGGATCAAGACCATAACATAGTCTAGAGATTCTAGCTGTAATCTTATCAAACT 480015 Query 49162 TTATATTCTCTTTACGACCGTC 49183 | | ||| ||||||||| Sbjct 480016 TGACGGGCTCACGACGACCGTC 480037 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||||| |||||||||||||| ||||| |||| || ||||| |||||| Sbjct 477819 GTTCTCAAATAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATAGAG 477878 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || || ||| | | || || ||| ||||| || | ||||||| |||||||| Sbjct 477879 GTCAACTTACCCATAGTTGGAGCTCTAATGTGAATGTTCAAAGATTGAGATTGATCAATG 477938 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 || ||| | | |||||| |||||||| | ||| | |||| | |||||||| || || Sbjct 477939 AAAGCAGCACGATCAGCAGCCATATCGATGATAGTCTTTTGAGAAATCTCCCAAACGGTC 477998 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGA-GATTAGTA--TTTTGAATAGATCC 47242 || || | | ||| | || | ||| | | || ||| ||||||||||| || Sbjct 477999 TTGTACAAATCTTTCAATTCCTTTGGAATGTTTGGTAAGTTTTGAATAGAACC 478051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108715683680