Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001599195.1_202016-03- 01] 12 sequences; 12,303,847 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 140 4e-28 seq5 129 6e-25 >seq6 Length=1133955 Score = 140 bits (154), Expect = 4e-28 Identities = 455/702 (65%), Gaps = 6/702 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || ||||| | ||||| |||||||||||||||| ||||| |||||||| Sbjct 479467 TACTTCACCCACGCTTCTCCAACTTTGTTCAACGCTGGTACCCCACACCCACAGATGTCC 479408 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||| ||||| |||| || || || ||||| || ||||| ||||| | || Sbjct 479407 TCTTGTTTCCTTGTGGCTATGAGAGAAGATTCCATCGAGGGTATCTATGAGACTTTGAAA 479348 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 | |||||| ||||||||| | |||||||||||| | ||| | ||||| | Sbjct 479347 CAATGTGCCTTGATCTCCAAGACCGCTGGTGGTATCGGTTTACACATCCATAACGTTAGA 479288 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || | ||| | || || || ||||| | | || | | || ||| | Sbjct 479287 GCTACAGGCTCTTACATTGCTGGTACTAACGGTACTTCTAACGGTTTGATTCCAATGGTT 479228 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 || ||||| |||||||| || || |||||| |||| |||||| ||| | || | Sbjct 479227 CGTGTCTTTAACAACACTGCTCGTTACGTCGACCAAGGTGGTAACAAGAGACCTGGTGCA 479168 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||| | || | || || |||||||| || || | || || |||| | | | Sbjct 479167 TTTGCCCTTTATTTGGAACCATGGCACGCAGATATCTTTGATTTCATCGACATTAGAAAG 479108 Query 53630 AATCAGGGTGACGAAGAGAT--GCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 ||||| ||| | |||||||| | ||| ||||| |||| |||| ||||||| || | Sbjct 479107 AATCACGGTAAAGAAGAGATCAGAGCT--CGTGATTTGTTCCCAGCATTGTGGATCCCTG 479050 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG-AG 53746 | | |||||| || || || | | || ||| || | | || || | || Sbjct 479049 ATTTGTTCATGGAACGTGTTGAATCTAATGGTGAATGGACTTTGTTCTCTCCAAATGAAG 478990 Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCA 53806 || | | | | | ||| || ||||| || || || | | ||| || ||| | Sbjct 478989 CACCAGGTCTTGCTGACTGT-TATGGTGATGAATTCAAGGCTCTTTATGAGAAGTATGAG 478931 Query 53807 GTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAG 53866 | || || | |||| |||||||| | || | ||| |||||||||| | Sbjct 478930 AAAGAAGGTCGTGGTAGAAAGACTGTCAAGGCTCAAAAGTTGTGGTATGCAATCCTTGAT 478871 Query 53867 AGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGC 53926 |||| ||||| || || || | |||| ||||||||| | |||||||||| Sbjct 478870 GCCCAGACTGAGACTGGTACTCCATTCATGCTTTACAAGGATGCCTGTAACGAGAAGACT 478811 Query 53927 AACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATGT 53968 |||||||||||| | || | ||||| || ||||| ||| Sbjct 478810 AACCAGAAGAACTTGGGTATGATCAAGTCTTCTAACTTGTGT 478769 Score = 122 bits (134), Expect = 1e-22 Identities = 146/195 (75%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 55734 AGATTT--ACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGA 55791 |||||| || ||| || ||||||||| | || |||| | | || || ||| |||||| Sbjct 478010 AGATTTGTACAAGACCGTTTGGGAGATTTCTCAAAAGACTATCATCGATATGGCTGCTGA 477951 Query 55792 TCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA-TCCTTCAC 55850 ||||| ||| | ||| || || || || ||| ||||||| ||| ||| ||| | Sbjct 477950 TCGTGCTGCTTTCATTGATCAATCTCAATCTTTGAACATTCACATT-AGAGCTCCAACTA 477892 Query 55851 TGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGT 55910 ||| ||||||| ||| |||||||| ||||| ||||||||||| | ||||| ||||||| Sbjct 477891 TGGGTAAGTTGACCTCTATGCACTTCTACGGTTGGAAGAAGGGTTTGAAGACTGGTATGT 477832 Query 55911 ACTATCTGCGGACCC 55925 ||||| || | |||| Sbjct 477831 ACTATTTGAGAACCC 477817 >seq5 Length=1593029 Score = 129 bits (142), Expect = 6e-25 Identities = 288/425 (68%), Gaps = 8/425 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| || ||||| ||||||||||||| | ||| || | | |||| |||| | Sbjct 649471 CCGGTACCAATACCCTCAGCACCGTTGACCAATACCATTGGAATAGTAGGAATGTAAGAA 649530 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||| || ||| | |||||||||||| ||| |||||| | | ||||| || Sbjct 649531 ACCGGTTCAACCAGCTGACCGTCATCCTCGTTGTAAGTCAAAAGAGCACTGTCATCCTTG 649590 Query 151996 TCGAATATCCGTCGA-GTCATAGGACTCAAACGCGTGAAGATGTATCGGG-AGCTGGCCG 152053 | || || | | || || | ||| |||| ||||| || || |||| ||| | | Sbjct 649591 TGGA-TAACGTTAGAAGTGAGTGGAGCCAAAGCGGTGAAAATATAACGGGGAGCAGAG-G 649648 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 ||||||| ||||| || | || || || ||| ||| ||| | ||| | || Sbjct 649649 CATCCTTACCACCCATCAATCTGGTACCGAAAGCACCATTTGGCAAGAGCAAGTTCAAGT 649708 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGT--GCCCTGCAGACTCGCTTC 152171 |||||| ||| || || | ||||||||| || | || || | | ||||| ||| Sbjct 649709 TGTTGGAGCCGACAAAGTCCTGAGCCAAGTTGATGATAGTCTGAACCAAAGACTG--TTC 649766 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 ||||||||| || || |||| ||| | ||||| || |||||||| || ||||| || || Sbjct 649767 ACCGTGGTGGTAAGCTGTCTTCTCTGAAATGTAACCAGCCAACTGGGCAACCTTGATTTC 649826 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 || ||| ||| |||| | ||| | | || | ||| | || ||| |||||||| Sbjct 649827 ATTCTTCAAGTTTCTCTTCAAACAACCAAACATAATCTTTCTTTGACCTGGCTTCAAACC 649886 Query 152292 GTCCA 152296 |||| Sbjct 649887 ATCCA 649891 Score = 114 bits (126), Expect = 1e-20 Identities = 379/583 (65%), Gaps = 20/583 (3%) Strand=Plus/Plus Query 74750 GGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCC 74809 |||||| || ||| | |||||||| | || ||||| ||||| || || | | || Sbjct 293550 GGCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAACTCATTAGAGAAAGTCAAACC 293609 Query 74810 AGGCATAAGTCCACGCTTCTTCAACCAAAAGAT---GGCACAGAAGGAACCACTGAAGAA 74866 ||||| | || | |||||||||||| || || |||| ||||||||| |||||| Sbjct 293610 TGGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCA---AAGGAACCAGAGAAGAA 293666 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC--GG----TGCATCGGA 74920 ||| ||||| ||| |||||||| ||||| | | ||||| || | |||||| Sbjct 293667 GATACCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCGAACAAGGCTTCTTCATCGGC 293726 Query 74921 AGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCG 74979 | ||||| || |||||| ||||| ||| | | | || || | ||| || || | Sbjct 293727 A---ATCCATCTCAAAGCCCAATCAGC-CTTCTTCTTAATACATGGAATAGTCTCAATGG 293782 Query 74980 CTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | | || | | || || |||||||||| ||||||||| || |||| Sbjct 293783 CATTAAACAAATACTCAGCCTGTTGTGGATCCTTGATATAAGTGTCAATCAAGAGAGAGT 293842 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | ||||| || ||||| ||| | | ||| | |||||||| || || |||| Sbjct 293843 ATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAACACTTAGCTTCTG 293902 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||| || || || || || ||| | | ||||| | ||||| ||||| || | Sbjct 293903 GAATTTGCACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCATTAACGATACCGTCAGAAG 293962 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGT 75216 |||| || || || || || ||| ||| || |||| ||| | | | |||| Sbjct 293963 CGGCAAAGAAGGCAAGAACACGAGAGATGAAGAAACGTTCATTCTCATTCAATCTGTTGT 294022 Query 75217 CCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCG 75276 |||||| | || ||| | ||||||||||||||| | ||||||||| | | Sbjct 294023 TCCAATCATGCAAATCCTTAGACAAATCAATCTCCTCAGCGGTCCAGAAAGAAGCTTCAG 294082 Query 75277 CCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||| ||||| ||| | ||| |||| |||||||| || Sbjct 294083 CCTTCTTGTATGCCTGCCAGATCTCATGGTACTTGATTGGGAA 294125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/276 (69%), Gaps = 18/276 (7%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAG-AGCTTGCAGCATCCTTGCCACC-AGCAAGACGCGTACCGAATT 117362 |||||||| ||||| | ||| | |||||||| ||||| | ||| | |||||||| Sbjct 649624 GTGAAAATATAACGGGGAGCA-GAGGCATCCTTACCACCCATCAATCTG-GTACCGAAAG 649681 Query 117363 GTCCACTCGGCTCCAAGAG---GTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGT 117419 ||| | ||| ||||| ||||| |||||||| ||| ||||||| |||||||||| Sbjct 649682 CACCATTTGGC---AAGAGCAAGTTCAAGTTGTTGGAGCCGACAAAGTCCTGAGCCAAGT 649738 Query 117420 TGACAATCGT----ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC 117475 ||| || || ||| || | ||||| ||||| || || |||| ||| | Sbjct 649739 TGATGATAGTCTGAACCAAAGA----CTGTTCACCGTGGTGGTAAGCTGTCTTCTCTGAA 649794 Query 117476 ACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCA 117535 | ||| || |||| ||| || ||||| || || | ||| ||| |||| | || || Sbjct 649795 ATGTAACCAGCCAACTGGGCAACCTTGATTTCATTCTTCAAGTTTCTCTTCAAACAACCA 649854 Query 117536 TAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || | ||| | |||| |||||||| ||||||| Sbjct 649855 AACATAATCTTTCTTTGACCTGGCTTCAAACCATCC 649890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600