Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20fabianii_20[genbank_20GCA_5F001983305.1_202017-02- 02] 25 sequences; 12,188,250 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 239 5e-58 seq9 217 2e-51 >seq6 Length=680632 Score = 239 bits (264), Expect = 5e-58 Identities = 416/599 (69%), Gaps = 7/599 (1%) Strand=Plus/Minus Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||||| |||||| ||||| ||| || | || || || | | ||||| |||||||| Sbjct 382403 AAACAACAAACAGGCAAAGTCAGTGTGCAAACCTTCATCACGGCAAATCAACTCATTAGA 382344 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 || || ||||| ||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 382343 GAAAGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAGAAAATAGAGGCAAAGGAACC 382284 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CAT 19129 ||| ||||| |||||||| || || ||||| ||||| ||||| || || ||| || | | Sbjct 382283 AGAGAAGAAGATACCTTCAACAGCGGCAAAGGCAACAAGTCTCTCACCG-AACAAGGCTT 382225 Query 19130 CATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | | || ||||||| ||| ||||||||||||||||| || | |||||| || |||| Sbjct 382224 CTTCATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTAATACATGGAATAGTCT 382165 Query 19190 CTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATA 19249 | || | |||||| | |||| | || | || ||| || | ||| | || ||||| | Sbjct 382164 CAATGGCATTAAACAAATACTCAGCCTGTTGTGGATCCTTGATATAAGTGTCAATCAAGA 382105 Query 19250 AACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG 19309 | ||| | || || ||||| || || || || || || ||||| ||||| | | Sbjct 382104 GAGAGTATGTCTCAGAGTGAATGTTCTCCATCATGATTTGGAAACCGTAGAAACACTTAG 382045 Query 19310 CTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCAT 19369 |||||| || || || || | | || | || ||||| || |||||||| || || | Sbjct 382044 CTTCTGGAATTTGCACCTCGGCAGAGAAGTTCTCAACCAAGTTCTCATTAACGATACCGT 381985 Query 19370 CACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAAT 19428 || ||| ||||| || || | ||| | || || |||| ||| | | ||| Sbjct 381984 CAGAAGCGGCAAAGAAGGCAAGAACACGAGAGATGAAGAAACGTTCATTCTCA-TTCAAT 381926 Query 19429 ---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | |||||||||| | ||| ||||| ||||| | || ||| | ||||| |||||| Sbjct 381925 CTGTTGTTCCAATCATGCAAATCCTTAGACAAATCAATCTCCTCAGCGGTCCAGAAAGAA 381866 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 || || || || || || | ||| || ||| | || | || || || | |||||| Sbjct 381865 GCTTCAGCCTTCTTGTATGCCTGCCAGATCTCATGGTACTTGATTGGGAAAAGAACAAA 381807 Score = 237 bits (262), Expect = 2e-57 Identities = 391/560 (70%), Gaps = 4/560 (1%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||||||||||| | |||||| | | ||||| || ||||| || ||||| Sbjct 464878 TTGATTGTACCCAAATTCTTCTGATTACTCTTTCTATTACAAGCATCCTTATAGAGCATG 464819 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 ||||| |||||||| | |||||||| | ||| || | ||| | || |||||| Sbjct 464818 AAAGGACCACCAGTTTCAACTTGAGATTCCAAGATTGAGTGCCATAACTTCTGAGCCTTA 464759 Query 48078 ATAA-CAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 || | || | | | | || | || ||||| ||| | | ||||||| || Sbjct 464758 ATCTTCTTCTTTGCCAATCCT-TCCTTCTCATATTTGTGATACAGTTGAACAAATTCTTC 464700 Query 48137 CCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 |||||||| | || || |||||| |||| |||| | ||| |||| || ||||| Sbjct 464699 ACCATACACCTCATTCAAACCAGGAGCATCATCTGGACTAAACAAGCACCATTCTTCATC 464640 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 || | ||| | ||| |||| |||||| ||||| ||||| ||| ||||| | || Sbjct 464639 TTTCTCAACTTTTTCCATGAATAGATCTGGGATCCATAGAGCATAAAACAAATCACGAGC 464580 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTT-TTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315 ||| | ||||| || ||| |||| | ||||||| |||||| ||||| | |||||||| Sbjct 464579 TCTCATCTCTTCCTTTCCATGATTCTTCCTTAAGTTTAAGAAA-TCCATCACATCAGCAT 464521 Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375 |||||||||| ||||| || || | | ||||||||| |||||||| |||||||| | || Sbjct 464520 GCCATGGTTCCAAATAGATGGCAAATGCACCTGGTCTCTTATTACCACCTTGATCAACAT 464461 Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435 |||| || || || ||| | ||||| | ||| || || ||||| ||||| ||||||| | Sbjct 464460 ATCTTGCGGTGTTATTAAACACTCTAAGCATAGGTACGATACCGTTTGAAGTACCATTTG 464401 Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTG 48495 ||| | ||| || ||| | ||||| || || || | ||| |||||||| | Sbjct 464400 ATCCGGCAATGTATGCACCAGTGGCTCTAATGCTAGATATATGTAGACCGATACCACCAG 464341 Query 48496 CCATTTTAGATATTAGAGCA 48515 | || || |||| |||| Sbjct 464340 CAGCCTTCGAGATTAAAGCA 464321 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 47018 TAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAA 47077 ||| ||||||||||||||||||| ||| |||| |||||||||||||| ||| | Sbjct 465848 TAAGTAATACATACCAGTCTTTAGTCCTTGCTTCCAGCCATAGAAATGCATCGAAGTGAG 465789 Query 47078 -TTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATG 47136 ||| | | || | || || ||||| || || ||||| ||||||||||||| Sbjct 465788 CTTTCGGA-AAGTTGGATCCCTCATATGGATGTTTGTGGATTGGGATTGATCAATAAATG 465730 Query 47137 CACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTAT 47196 ||||| || || ||| | |||||| | | |||||| || ||||||||||| || Sbjct 465729 GTCCTCTCTCGGCACACATCTGTAAAATCCCACGTTGTGGGATTTCCCATACTGTACGAT 465670 Query 47197 AAATTTGTTTAATGTCTTCTGGGA 47220 ||| |||| | || ||||||| Sbjct 465669 GAATCAGTTTCAAGTTCTCTGGGA 465646 >seq9 Length=581722 Score = 217 bits (240), Expect = 2e-51 Identities = 860/1341 (64%), Gaps = 45/1341 (3%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 ||| || || || | ||||| ||||| || || | ||| | || |||| | || || Sbjct 353793 TGCAATGGAGGCCAAGTTACAAACAGCAACTTCTTCTGGGTCAGAGTATTCGACAATCTC 353734 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 | ||| | ||| | | ||||| ||||||| || | || ||| | | |||||| Sbjct 353733 ACAACACAAGTTAGAAGACTTGATCATACCCAAGTTCTTCTGGTTAGTCTTCTCGTTACA 353674 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTT 48058 || |||||||||||||| || || || ||||| || |||| | |||| ||| | | Sbjct 353673 GGCATCCTTGTAAAGCATGAATGGAGTACCAGTCTCAGTCTGGGCATCAAGGATTGCATA 353614 Query 48059 CCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATA 48118 ||| | | |||||| | | |||| | | || | || || || ||| Sbjct 353613 CCACAACTTTTGAGCCTTGACAGTCTTTCTACCACGACCTTCTTTCTCATACTTCTCATA 353554 Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACAT 48178 | || |||||||| ||||| || | | | || || |||||| ||| | | Sbjct 353553 AAGAGCCTTGAATTCATCACCATAACAATCAGCAAGACCTGGTGCTTCATTTGGAGAGAA 353494 Query 48179 CAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGC 48238 ||| | ||| || ||| | | || | ||| || | ||| || ||||| | || Sbjct 353493 CAAAGTCCATTCACCATTAGACTCAACACGTTCCATGAACAAATCAGGGATCCACAATGC 353434 Query 48239 TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAA 48298 | || ||||| | || ||| | ||||| || || |||| || ||| || | || Sbjct 353433 TGGGAACAAATCACGAGCTCTGATCTCTTCTTTACCGTGATTCTTTCTAATGTCGATGAA 353374 Query 48299 GTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATT 48358 || | ||||| || ||||||||||| ||||| | || | | |||| |||| || || Sbjct 353373 ATCAAAGATATCTGCGTGCCATGGTTCCAAATAAAGGGCAAATGCACCAGGTCTCTTGTT 353314 Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| ||||| || | || | ||||| |||||| | || | | |||||| | | ||| Sbjct 353313 ACCACCTTGGTCGACGTAACGAGCAGTGTTGTTAAAGACACGAACCATTGGAATCAAACC 353254 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TG 48477 || || |||| || || || | ||| ||| || ||||||| | ||| || || Sbjct 353253 GTTAGAAGTACCGTTAGTACCAGCAATGTAAGAACCTGTAGCTCTAACGTTATGGATGTG 353194 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 || ||| |||||||| || | || || || | ||||| |||| | || ||||| | Sbjct 353193 TAA-ACCGATACCACCAGCGGTCTTGGAGATCAAGGCACATTGTTTCAAAGTCTCATAGA 353135 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 | || || || ||| ||| ||||| | || |||||| ||||| || || || Sbjct 353134 TACCCTCGATGGAATCTTCTCTCATAGCCACAAGGAAACAAGAGGACATCTGTGGGTGTG 353075 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | || || || |||||||| || || | || || |||| || | | | Sbjct 353074 GGGTACCAGCGTTGAACAAAGTTGGAGAAGCGTGGGTGAAGTATCTCTCAGACATGAGGT 353015 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 |||| || |||||||| || | ||||| | ||| ||||| |||| || | ||| | Sbjct 353014 TATAAGTCTCAATAACTGATTTAATATCTCTACCATGGATACCGATAGCGACTCTCATGA 352955 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 || || || || | |||| | | ||| ||| | ||| | || ||| | |||| Sbjct 352954 TCAAATGCTGTGGACGTTCAGCGACTTTACCATTAACACGCAACAAGTAAGATCTCTCCA 352895 Query 48778 ATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAATTGATGA--- 48832 |||| || |||||||| ||||| || ||||| || |||| | || || | || Sbjct 352894 ATGTCTTGAAACCAAAGTAGTTATAGTTGAAA--TCTCTATCGTAGATGATGGCAGAGTC 352837 Query 48833 -ATTTATTCTTT----CCTT-----ATGT------TT---ATATACTACATC----CAT- 48868 | | ||||| ||| |||| || || || ||||| || Sbjct 352836 CAACTCGTCTTTGAACTCTTGAACAATGTCATAAGTTTCCTTAGACAACATCGGAGAATG 352777 Query 48869 TACAT---TTTTTGATATAATTGATTCCTTGTAAAGATCTTCTACAACATCACTAAATAt 48925 | || | |||| |||| | |||||||| ||||| |||||| | || Sbjct 352776 GAGATCGGTCTTTGGGTTAAT---GTAGTTGTAAAGCTCTTCGACAACAGAAGAGAACTG 352720 Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 ||| | |||| ||||| | |||||| || | |||||||||||||| ||||||| || Sbjct 352719 TTTAGTGGTTTGCTTATGCAAATTAGAGATGGCAATTCTAGCAGCTAAAGTAGCATAGTC 352660 Query 48986 TGGATGAATTGTTGTACATGTA-CTAGATATTTCTGCTGCTAATATATCTAATTCTTTAG 49044 |||||||| || || ||| || | | | || || || || |||| || || ||| Sbjct 352659 TGGATGAACAGTAGT-CATATAGGCACAAGTCTCAGCAGCCAAGTTATCCAACTCGATAG 352601 Query 49045 TAGTTACACCTGTATATATTCCTTGAATAA--CTTTCATTGCTATATTTACTGGATCTAT 49102 | || |||||| ||| | || || | |||| | || || || || | ||| || Sbjct 352600 TGGTGACACCTTCATAAACACCAGAGATGATTCTTTGAGTG--ATCTTAACGGCATCAAT 352543 Query 49103 ATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACAT 49162 ||| || ||| || |||||||||| | | ||||||| |||||| ||||||||| | Sbjct 352542 ATGTTCTGGATCAAGACCATAACATAGTCTAGAGATTCTAGCTGTAATCTTATCAAACTT 352483 Query 49163 TATATTCTCTTTACGACCGTC 49183 | ||| ||||||||| Sbjct 352482 GACGGGCTCACGACGACCGTC 352462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||||| |||||||||||||| ||||| |||| || ||||| |||||| Sbjct 354680 GTTCTCAAATAGTACATACCAGTCTTCAAACCCTTCTTCCAACCGTAGAAGTGCATAGAG 354621 Query 47073 GTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATA 47132 || || ||| | | || || ||| ||||| || | ||||||| |||||||| Sbjct 354620 GTCAACTTACCCATAGTTGGAGCTCTAATGTGAATGTTCAAAGATTGAGATTGATCAATG 354561 Query 47133 AATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTT 47192 || ||| | | |||||| |||||||| | ||| | |||| | |||||||| || || Sbjct 354560 AAAGCAGCACGATCAGCAGCCATATCGATGATAGTCTTTTGAGAAATCTCCCAAACGGTC 354501 Query 47193 TTATAAATTTGTTTAATGTCTTCTGGGA-GATTAGTA--TTTTGAATAGATCC 47242 || || | | ||| | || | ||| | | || ||| ||||||||||| || Sbjct 354500 TTGTACAAATCTTTCAATTCCTTTGGAATGTTTGGTAAGTTTTGAATAGAACC 354448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108624341000