Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 266 4e-66 seq4 163 3e-35 >seq5 Length=1517892 Score = 266 bits (294), Expect = 4e-66 Identities = 642/970 (66%), Gaps = 4/970 (0%) Strand=Plus/Minus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 ||||| ||||||| |||||||| || ||||| | | | | || | | |||||| Sbjct 776052 GCAATGGATGCCAAGTTACAAACAGCAACCTCGTCTGGAGAAGAGTACTCGACAATCTCA 775993 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 || | || | |||||||| | || || || | ||||| |||||||||||| Sbjct 775992 CAACACAAGTTCGAAGACTTGATGATACCCAAGTTCTTCTGATTGGACTTTTTGTTACAA 775933 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 ||||| |||||||| |||||||| |||||||||||| |||| | || | ||||| | | Sbjct 775932 GCATCTTTATAAAGCATGAATGGTGTACCAGTTTCAGTCTGTGCCTCCAAGATCGCATAC 775873 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCT--TTTCTCTTTCGTATAGTGTAT 53942 |||| ||||||| | | ||| | || | |||| |||||| ||||| Sbjct 775872 CAGAGCTTTTGAGCCTTCACAGT--CTTTCTTCCTTTACCTTCTTGTTCGTACTTTGTAT 775815 Query 53943 ACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACA 54002 ||||| |||||| || || || | ||| |||| |||| | |||| ||| | | Sbjct 775814 ACAATGCTTCAAATTCATCACCATATGCATCAGCCAAGCCAGTAGCCTCATTTGGAGAGA 775755 Query 54003 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 54062 || | ||| || |||| | | || || ||||| || ||||| |||||||| | | Sbjct 775754 ATAAAGTCCATTCACCGTTCTGTTCAACACGCTTCATGAACAGATCTGGAATCCACAAGG 775695 Query 54063 CTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122 || || | ||| | | ||| || || || || |||||| | | ||||| || Sbjct 775694 CTGGGAACAAATCACGAGCTCTGATCTCTTCCTTACCGTGGTTCTTTCTGATATCGATGA 775635 Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182 | | | ||||| | ||||| || |||||||| | || | | || || | |||| Sbjct 775634 AATCAAAGATATCCGCGTGCCATGGCTCCAAGTACAAGGCAAATGCACCTGGTCTCTTGT 775575 Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242 | || || || || | |||||| || ||||||||| | || | | ||| ||||| | || Sbjct 775574 TACCACCTTGGTCGACGTATCTTGCAGTGTTATTAAAGACACGGACCATAGGAATCAAAC 775515 Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 54302 |||| || | ||| ||||| || | ||| ||| || | | ||||| ||| Sbjct 775514 CATTAGAGGTACCGTTGGTACCAGCGATGTAGGACCCTGTACTTCTGATATTGTGAATGT 775455 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 | ||| || || || || | |||||||| || || ||| | || || || || |||| Sbjct 775454 GCAAACCGATACCACCAGCGGTCTTAGAGATCAAGGCACATTGCTTCAAGGTGTCGTAGA 775395 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | || || || || ||| |||| || || ||||| ||||| || | | Sbjct 775394 TACCTTCGATGGAGTCTTCCTTCATAGCAACGAGGAAACAAGAGGACATCTGTGGGCTTG 775335 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 ||| || ||||| || || || ||||||||||| || || | |||||| | || | Sbjct 775334 GAGTACCAGCATTGAACAAAGTTGGAGAAGCGTGTGTGAAGTAACGTTCAGACATCAGGT 775275 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 |||| || || || | || | ||||| | || || || | || |||||||| | Sbjct 775274 TGTAAGTTTCAATCACGGACTTCATATCTCTACCGTGGATACCGATGGCCACACGCATCA 775215 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 || |||||| || | || | | ||| ||| | | | |||||||||||| | |||| Sbjct 775214 CCAAGTGCTGTGGACGCTCGGCAACTTTGCCGTTCACTCTGAGCAAGTAGGATCTCTCCA 775155 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGA 54662 | || || |||||||| |||||||| ||||||| ||||| | ||| | ||||| | Sbjct 775154 ATGTCTTGAAACCAAAGTAGTTGTAGTTGAAGTCTCTGTCGTAGACAATGGCAGAGTTCA 775095 Query 54663 GTTTATCCTT 54672 | |||||| Sbjct 775094 ACTCATCCTT 775085 Score = 84.2 bits (92), Expect = 3e-11 Identities = 171/248 (69%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 52807 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 52866 |||||||||||| | ||| ||||||| || || | | |||||||| || || || | Sbjct 776971 TGTGAATTGAATAGCAGCAGATGCGGCTTGTGTTCTCAAGTAGTACATACCGGTCTTCAA 776912 Query 52867 ACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTT-GGAATAACT-CGGATCTGCT 52924 || |||| ||||| || ||||| || ||||| || | || |||| Sbjct 776911 GCCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTTACCCATGGTTGGGGCTCTG-- 776854 Query 52925 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 52984 ||||| || |||| ||||||| ||| |||||| | || | | || |||||||| | Sbjct 776853 ATATGAATGTTCAAAGATTGAGATTGGTCGATGTAAGCAGCACGATCGGCAGCCATATCA 776794 Query 52985 ATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 53043 ||||| |||||||| | |||||||| | || || || || || | ||| ||| ||| Sbjct 776793 ATGATGGTCTTTTGAGAGATTTCCCATACGGTCTTGTACAAGTCCTTCAATTGCTT-TGG 776735 Query 53044 AAGGTTTG 53051 || ||||| Sbjct 776734 AATGTTTG 776727 >seq4 Length=1931745 Score = 163 bits (180), Expect = 3e-35 Identities = 392/582 (67%), Gaps = 17/582 (3%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 53770 || || ||||||||||| || | || | ||| ||| || | || ||| ||| Sbjct 969721 GAAGCTAGATTACAAACAGCAATTTCTTCTGCAGAACTATACTGAACAATTTCACAGCAT 969662 Query 53771 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 53830 || || | | ||||| ||||| || |||| ||| || ||||| |||||||| || ||| Sbjct 969661 AGGTTTGAAGATTTGATTGTTCCCAAGTTTTTTTGGTTGCTCTTCTTGTTACAAGCGTCC 969602 Query 53831 TTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACG 53890 |||||||| ||||||||| ||||||||| | ||| |||| ||| || ||||||| | Sbjct 969601 TTATAAAGCATGAATGGCCCACCAGTTTCCACTTGGCTCTCTAAAATGGCGTTCCAGA-G 969543 Query 53891 ACAC-GAGCCTTTATTATAGATTTGTATCT---CTTTTCTCTTTCGTATAGTGTATACAA 53946 | | | || || | | | || || | | || ||| | ||| |||||| Sbjct 969542 CCTCTGTGCTTTGACTGTT--TTCATAGCAAGGCCTTCCTCGGT-GTACTTCTCATACAA 969486 Query 53947 TCGTTCAAACTCGTCTCCCCAAA---CATTGTCCAATCCAGGACATTCATCCGGACACAT 54003 | | || || ||||| | ||||| | ||| | ||| ||| | | Sbjct 969485 CCTCTTGAAGTCATCTCCATACGTCTCATTG---AGTCCTCTTGCCTGATCAGGAGAGAA 969429 Query 54004 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 54063 | ||| ||| | | ||| | |||| || |||||| |||||||| ||||| | || Sbjct 969428 GAGATTCCATTCTTCATTATCTTGCACTTTTTCCATAAACAGATCAGGTATCCACAAGGC 969369 Query 54064 TATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 54122 ||| || |||||||| | || ||||||| || || ||||| |||||| |||| Sbjct 969368 -ATAGAACAGATCTCTTGCTCGCAGTTCCTCCTTCCCATGGTTCTTCCGAAGATCCAGGA 969310 Query 54123 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGT 54182 || | | | ||||| |||||| |||||||||||||| | | | || |||| || | Sbjct 969309 ACTCAAAGACATCAGCATGCCATGGTTCCAAGTATATTGCAAAGGCCCCTGGCCTCTTAT 969250 Query 54183 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 54242 | || || ||||| | || || || || || ||| | |||||||||||||||| || | Sbjct 969249 TCCCACCTTGATCCACATACCTGGCTGTATTGTTAAACACTCTCAACATTGGAACTATTC 969190 Query 54243 CATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 ||||||| | ||||| || || | ||||||| ||| |||| Sbjct 969189 CATTGGAAGTGCCATTTGTACCAGCGATATAGGATCC-CTGG 969149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721548049360