Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq6 141 9e-29 >seq6 Length=1261692 Score = 141 bits (156), Expect = 9e-29 Identities = 566/879 (64%), Gaps = 23/879 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| |||||||| || ||||| ||||| || || | | || || || Sbjct 58798 TTTTGGTAATCAGAGACTCTCTTCTCGAAGAAGTTTGTCTTACCAGCAAGGGAGATGTTC 58739 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 |||||||| || || || ||| | ||| | || | | | |||| | |||| | Sbjct 58738 TCCATAAAGTCGAATGGGTTTGTATCGTTGTAGAACTTCTTGT-TACCAAGTGCAACGAG 58680 Query 16064 -AATCTATCCGCCACAAATTCTATA-TACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 |||||||| || ||| | |||| || || ||| || | ||||||||| || | | Sbjct 58679 CAATCTATCAGC-ACAGAATCTAACGTATTGACACATCAACTTACAGTTCATACCCAAGA 58621 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | || | || ||||| || | | | ||| || | || ||||| |||| | Sbjct 58620 GAGACGCTGGAAGAGCATCTGTAAAGTACTCTGATTCAATCTCGACAGCTTCGGTGATGA 58561 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTT--TAAT-AAGTGTTTAAACATTATACAAG 16238 | ||||| | ||| | | | | || || | | ||||| ||||| | ||||| Sbjct 58560 T-TCTCTCA--ACAATCTCTGGTGCTGGCTTGTTCTTCAAGTGGGCAAACAACAAACAAG 58504 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 | ||||| || || |||||||| | | || |||||||| || || || | ||||| Sbjct 58503 CGAAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAGGTCAAACCTG 58444 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| | |||| || || | |||||| || | ||| |||||||| || ||||| |||| Sbjct 58443 GCATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAGAAGAAGATAC 58384 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 ||||||| || ||||| ||||| | || ||| | | | | | | |||| Sbjct 58383 CTTCAACAGCAGCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCATCATCGGCAATCC 58324 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 || | |||||||| || || | || | ||| ||| | || || || || || | Sbjct 58323 ATCTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAATGGCGTTGAACA 58264 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | || || || || || || || || | || || | || | Sbjct 58263 AGAACTCAGCCTCCTTTGGGTCCTTGATGTAGGTGTCGATCAACAAGGAGTAAGTCTCAG 58204 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 | || || |||||||| ||||| || ||||| ||||| |||| || | ||||| | Sbjct 58203 AGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAGCCTCTGGGATTTGAA 58144 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 | || | | || |||| | ||||| ||||| || || || || ||| ||||||| Sbjct 58143 CCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCGTCAGAAGCGGCAAAAA 58084 Query 16659 ACGCAAGTA----TGTGTTTAATAAA--AtttttttCGTT--ATCTGAAAGTTTTAACCA 16710 | || || | || | | || ||| | || ||||| ||||| || ||| Sbjct 58083 AGGCCAGCACTCTTGAGATGAAGAAACGCTCGTTCTCGTTCAATCTG-----TTGTTCCA 58029 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTT 16770 ||| ||||| ||||||||||| | ||| || ||||||| || ||||| ||||||| Sbjct 58028 GTCGTGCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTT 57969 Query 16771 TTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 |||||| || ||| || || | ||| |||||| || Sbjct 57968 CTTATACGCTTGCCAAATCTCATGGTACTTAATAGGGAA 57930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511959530200