Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq4 98.7 8e-16 seq1 96.9 3e-15 >seq3 Length=2123196 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||||| || ||| |||||| || ||||||||||| | Sbjct 1815514 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1815573 Query 45170 --AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 |||| | | | || |||| ||| || ||||| || ||||| | |||||||| || | Sbjct 1815574 AAAGTT--CTACCATCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTG 1815631 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||| |||||| || || ||| || | | | |||| ||| | Sbjct 1815632 GGATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAA 1815691 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||| |||||| ||||| || || || || || || || |||||||| ||| Sbjct 1815692 CCTCCAAGGTAATGGTCTTACCTGTAAGGGTTTTGACGAAAATTTGCATCTTG 1815744 >seq4 Length=1931745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||||| || ||| |||||| |||||||||||||| | Sbjct 933736 CCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 933795 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || |||| |||||| || ||||| ||||| | || ||||| || | Sbjct 933796 AAGGTT--CTGCCATCCTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTG 933853 Query 45228 GCACACCCTCCTTGTCC 45244 | | ||||||||||||| Sbjct 933854 GAATACCCTCCTTGTCC 933870 >seq1 Length=2451740 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| | |||||||| || ||| |||||| || ||||||||||| | Sbjct 160698 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 160639 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | || |||| ||| || || || || ||||| | |||||||| || | Sbjct 160638 AAGGTT--CTGCCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTG 160581 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | |||||||||||| || || ||| || | | | |||| ||| | Sbjct 160580 GAATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCAA 160521 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 |||||| |||||| ||||| || |||| ||||| || ||| Sbjct 160520 CCTCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAAG 160480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075166295147