Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 237 1e-57 seq3 87.8 2e-12 >seq5 Length=1517892 Score = 237 bits (262), Expect = 1e-57 Identities = 1179/1857 (63%), Gaps = 50/1857 (3%) Strand=Plus/Minus Query 22154 TAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTT 22213 || ||||| || ||||||| ||| ||||||| |||| || || |||||||| | ||| Sbjct 776931 TAGTACATACCGGTCTTCAAGCCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTTA 776872 Query 22214 CC-ATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCC 22272 || || | || | || | | || || || ||| || ||||| | || | Sbjct 776871 CCCATGGTTGGGGCTCTG-ATATGAATGTTCAAAGATTGAGATTGGTCGATGTAAGCAGC 776813 Query 22273 TCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 |||||||| ||||||| || | || || |||||||||||||||||||||| Sbjct 776812 ACGATCGGCAGCCATATCAATGATGGTCTTTTGAGAGATTTCCCATACGGTCTTGTACAA 776753 Query 22333 TTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGA 22391 | | | | | || || | || | | | |||| ||| ||||| | | ||||| Sbjct 776752 GTCCTTCAATTGCTTTGGAAT-GTTTGGCAAGTTTTGGATGGAACCGTTGTCGGATATGA 776694 Query 22392 TCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGAC 22451 | || || || | || | ||| | ||| | | | |||||| | || | Sbjct 776693 TGTGGTTCTTCATTGCGTCATCCCAGATACCCAAGTCAACCAAATCACGCAGCAAGTATG 776634 Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 ||||||| | || || || |||| ||||| | || || ||| || || || ||| | Sbjct 776633 GGTTCACAATCTGGAATTCACCGG-CAAGAACACGACGAGAGTAGATATTAGAAGTGTAT 776575 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 || || ||| |||| |||| |||| || |||| || || || || ||||| || || Sbjct 776574 GGCTCAAAACATTCGTTGTAACCCAAGATTTGAGATGTAGAGGCAGTTGGCATTGGTGCA 776515 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA-CTCT---TGAGCATCGACCA 22626 | || || |||||||||| || | ||| ||||| | | || | |||| || ||| Sbjct 776514 ACCAAAAGAGAGTTTCTCATACCATACTTGGAAATGTCAGCTTTCAATGAG--TC--CCA 776459 Query 22627 GTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACT 22686 ||||||| || | ||| | | |||| | || ||||||| ||| || Sbjct 776458 ATCCCACAAGTCAGTTGGCTTACGAC---CCCAGAGGTCAAATTGCAATTGGCCCTGAGA 776402 Query 22687 CGCCGGGCTGCCTTCGTACGTTTCGTACGGACCAT-ATATCGCGGCAAGTTCGCAGCTCG 22745 || || |||| | | | |||||| | ||| | | | | | ||| | ||| | Sbjct 776401 AGCTGGAGAGCCTGGGAAGGATTCGTAGGCACCTTCAGCTTGAGCCAACTCAACAGAG-G 776343 Query 22746 CCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGA 22805 |||| | || |||| || ||||| || ||||||| ||||||| || || || Sbjct 776342 CCTCGACAGCACCGTGGTAGATAGTTTCAAAGATTTGGATGTTCAACTCTTTAGCAGCAT 776283 Query 22806 CGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATAC 22865 | || | |||||||| | ||||| ||| || ||||| | || || || || | Sbjct 776282 CAGACTCAAAAGGCATACGTAACATCATGAAGGCATCCGCAAGGCCTTGGACACCAAGGG 776223 Query 22866 CGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAAT 22925 | || |||| |||| ||| || || | || || || | || || |||| | Sbjct 776222 CAATTGGTCTGTTTCTCATGTTAGAAGCACGAGCTTCTGGAACTGGGTAGTAATTTCTGT 776163 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| ||||||||||||| | || | | || | || | |||| Sbjct 776162 CGATGATTCTGTTCAAGTTCTTTGTAAGCACCTTGGCAATATCGTGCAACTTTTGGAAGT 776103 Query 22986 CGTAAACGCCCGATTGTA-----CAACAAACTTGT----------TG--ACGGCGATCGA 23028 ||| | || | | |||| |||| | || | ||| || || Sbjct 776102 TATAA--GTTTGAGTCAAACCATCAACCGACTTCTCAATGAAAGCTGGAAGGGCAATGGA 776045 Query 23029 GGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAG 23088 || | || || || || ||||||||| || | |||||| ||||| || ||| | Sbjct 776044 TGCCAAGTTACAAACAGCAACCTCGTCTGGAGAAGAGTACTCGACAATCTCACAACACAA 775985 Query 23089 ATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG--CTTTTTCGATTGCACGAATCC 23146 || | |||| || | ||||| || |||| ||| |||||| || || | ||| Sbjct 775984 GTTCGAAGACTTGATGATACCCAAGTTCTTCTGATTGGACTTTTTG--TTACAAGCATCT 775927 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 || || |||||| | || || || || || ||| | ||| | |||||| ||| | Sbjct 775926 TTATAAAGCATGAATGGTGTACCAGTTTCAGTCTGTGCCTCCAAGATCGCATACCAGAGC 775867 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 | ||||| | ||| ||| | | | | ||||||| ||||||||| ||||| || Sbjct 775866 TTTTGAGCCTTCACA-GTCTTTCTTCCTTTACCTTCTTGTTCGTACTTTGTATACAATGC 775808 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 |||||||| |||| || || |||| ||| | | | | ||| | | | | | Sbjct 775807 TTCAAATTCATCACCATATGCATCAGCCAAGCCAGTAGCCTCATTTGGAGAGAATAAAGT 775748 Query 23326 CCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 ||| || | || | |||||| || |||| || ||||| || ||||| | || | Sbjct 775747 CCA--TTCACCGTTCTGTTCAACACGCTTCATGAACAGATCTGGAATCCACAAGGCTGGG 775690 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 |||| || || || | | ||| || || ||| ||||||| | | ||| | || || Sbjct 775689 AACAAATCACGAGCTCTGATCTCTTCCTTACCGTGGTTCTTTCTGATATCGATGAAATCA 775630 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || | ||||| ||||| ||||| | ||| | |||||| || || |||||||| || || Sbjct 775629 AAGATATCCGCGTGCCATGGCTCCAAGTACAAGGCAAATGCACCTGGTCTCTTGTTACCA 775570 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 || || |||||||| | || ||||| || | || | | ||| || | | ||| || Sbjct 775569 CCTTGGTCGACGTATCTTGCAGTGTTATTAAAGACACGGACCATAGGAATCAAACCATTA 775510 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| || || | || ||| | || | ||||||| ||| ||| Sbjct 775509 GAGGTACCGTTGGTACCAGCGATGTAGGACCCTGTACTTCTGATATTGTGAATGTGCAAA 775450 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || |||| || ||||| |||| ||||||||||| || Sbjct 775449 CCGATACCACCAGCGGTCTTAGAGATCAAGGCACATTGCTTCAAGGTGTCGTAGATACCT 775390 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 |||||| ||| || || | || || | |||||| || ||||| || | | || ||| Sbjct 775389 TCGATGGAGTCTTCCTTCATAGCAACGAGGAAACAAGAGGACATCTGTGGGCTTGGAGTA 775330 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || ||||| || || ||||| || ||||| | | ||||| || ||||| Sbjct 775329 CCAGCATTGAACAAAGTTGGAGAAGCGTGTGTGAAGTAACGTTCAGACATCAGGTTGTAA 775270 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || || ||| | || || ||| ||||| ||||||||||| || ||||||| || Sbjct 775269 GTTTCAATCACGGACTTCATATC-TCTACCGTGGATACCGATGGCCACACGCATCACCAA 775211 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || || | |||| | |||||| | | ||| || || || | | || || Sbjct 775210 GTGCTGTGGACGCTCGGCAACTTTGCCGTTCACTCTGAGCAAGTAGGATCTCTCCAATGT 775151 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || || ||||| |||| ||||| ||||| | |||| || ||||| || ||||| Sbjct 775150 CTTGAAACCAAAGTAGTTGTAGTTGAAGTCTCTGTCGTAGACAATGGCAGAGTTCAA 775094 >seq3 Length=2123196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || || || ||||| || || || ||| | || ||||| | Sbjct 1815743 AAGATGCAAATTTTCGTCAAAACCCTTACAGGTAAGACCATTACCTTGGAGGTTGAGTCC 1815684 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | || | ||||| | || |||||| || || | || || ||| Sbjct 1815683 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATCCCACCAGAC 1815624 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || || || || || ||||| || || ||| || || || Sbjct 1815623 CAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 1815564 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| || || |||||||| |||| || ||| |||| || ||| Sbjct 1815563 AACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGT 1815513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766360995440