Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 293 3e-74 seq4 187 3e-42 >seq5 Length=1517892 Score = 293 bits (324), Expect = 3e-74 Identities = 710/1070 (66%), Gaps = 14/1070 (1%) Strand=Plus/Minus Query 63019 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63078 ||||||| | || || || | ||||| |||||||||||| ||||| |||||||| | Sbjct 775976 ACTTGATGATACCCAAGTTCTTCTGATTGGACTTTTTGTTACAAGCATCTTTATAAAGCA 775917 Query 63079 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63138 ||||||| |||||||||||| |||| | || | ||||| | ||||| | |||||| Sbjct 775916 TGAATGGTGTACCAGTTTCAGTCTGTGCCTCCAAGATCGCATACCAGAGCTTTTGAGCCT 775857 Query 63139 TTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | | | | | | | | |||| |||||| ||||||||| ||| || || | Sbjct 775856 TCACAGTCTTTCTTCCTTTACCTTCTTGTTCGTACTTTGTATACAATGCTTCAAATTCAT 775797 Query 63199 CTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGT 63258 | || | ||| |||| | || | |||| ||| | | || | ||| || |||| Sbjct 775796 CACCATATGCATCAGCCAAGCCAGTAGCCTCATTTGGAGAGAATAAAGTCCATTCACCGT 775737 Query 63259 CATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTG 63318 | | || || ||||| || ||||| |||||||| | ||| || | ||| | | Sbjct 775736 TCTGTTCAACACGCTTCATGAACAGATCTGGAATCCACAAGGCTGGGAACAAATCACGAG 775677 Query 63319 TTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAAT 63378 ||| || || || || |||||| | | ||||| ||| | | ||||| | | Sbjct 775676 CTCTGATCTCTTCCTTACCGTGGTTCTTTCTGATATCGATGAAATCAAAGATATCCGCGT 775617 Query 63379 GCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGT 63438 |||| || |||||||| | ||| | | || || | ||||| || || || || | || Sbjct 775616 GCCATGGCTCCAAGTACAAGGCAAATGCACCTGGTCTCTTGTTACCACCTTGGTCGACGT 775557 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| || ||||||||| | || | | ||| ||||| | ||| || || |||| |||| Sbjct 775556 ATCTTGCAGTGTTATTAAAGACACGGACCATAGGAATCAAACCATTAGAGGTACCGTTGG 775497 Query 63499 TACCGGAGATATAG---CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCC 63555 |||| | ||| ||| ||| ||| | ||||| ||| | ||| || || | Sbjct 775496 TACCAGCGATGTAGGACCCTGTACTT---CTGATATTGTGAATGTGCAAACCGATACCAC 775440 Query 63556 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTAT 63615 | || | |||||||| || || ||| | || || ||||| ||||| ||||| ||| | Sbjct 775439 CAGCGGTCTTAGAGATCAAGGCACATTGCTTCAAGGTGTCGTAGATACCTTCGATGGAGT 775380 Query 63616 CATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAA 63675 | || |||| || || ||||| ||||| || | | | ||| || ||||| | Sbjct 775379 CTTCCTTCATAGCAACGAGGAAACAAGAGGACATCTGTGGGCTTGGAGTACCAGCATTGA 775320 Query 63676 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 | || || ||||||||||| || || | |||||| | || ||||| || ||||| Sbjct 775319 ACAAAGTTGGAGAAGCGTGTGTGAAGTAACGTTCAGACATCAGGTTGTAAGTTTCAATCA 775260 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 | || | ||||| | || || || | || |||||||| | || |||||| || | Sbjct 775259 CGGACTTCATATCTCTACCGTGGATACCGATGGCCACACGCATCACCAAGTGCTGTGGAC 775200 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || ||| |||| ||| | | | | |||||||||| | ||||| || || ||||||| Sbjct 775199 GCTCGGCAACTTTGCCGTTCACTCTGAGCAAGTAGGATCTCTCCAATGTCTTGAAACCAA 775140 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATT 63915 | |||||||| ||||||| ||||| | ||| | || || | || |||||| | | Sbjct 775139 AGTAGTTGTAGTTGAAGTCTCTGTCGTAGACAATGGCAGAGTTCAACTCATCCTTGAACT 775080 Query 63916 TGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAATGTTTCCCAT---TTTTA 63971 | || |||| ||| | ||| || | || || | || | || | || Sbjct 775079 CTTGGACAATAT-CATAAGTCTCCTTAGACACCATTGGCGCGTG---CAAATTGGTCTTT 775024 Query 63972 GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTG 64031 || || | ||||||| | || || || ||||| | || ||| | || | |||| |||| Sbjct 775023 GGGTTGATATAGTTGTACAACTCTTCAATCACAACGCTGAATTGCTTCGTGGTTTGCTTG 774964 Query 64032 TGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64081 || | || || ||||| |||||||| || || | ||||| ||||| || Sbjct 774963 TGCAAGTTGGAGATGGCGATTCTGGCAGCAAGCGTAGCATAGTCCGGGTG 774914 Score = 93.3 bits (102), Expect = 5e-14 Identities = 319/489 (65%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 62045 TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 62104 |||||||||||| | ||| ||||||| || || | | |||||||| || || || | Sbjct 776971 TGTGAATTGAATAGCAGCAGATGCGGCTTGTGTTCTCAAGTAGTACATACCGGTCTTCAA 776912 Query 62105 ACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT-GGAATAACT-CGGATCTGCT 62162 || |||| ||||| || ||||| ||| ||||| || | || |||| Sbjct 776911 GCCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTTACCCATGGTTGGGGCTCTG-- 776854 Query 62163 ATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTT 62222 ||||| || |||| ||||||| ||| |||||| | || | | || |||||||| | Sbjct 776853 ATATGAATGTTCAAAGATTGAGATTGGTCGATGTAAGCAGCACGATCGGCAGCCATATCA 776794 Query 62223 ATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 ||||| |||||||| | |||||||| | || || || || || | ||| ||| ||| Sbjct 776793 ATGATGGTCTTTTGAGAGATTTCCCATACGGTCTTGTACAAGTCCTTCAATTGCTT-TGG 776735 Query 62282 AAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATC 62338 || ||||| || || ||||| || || || || ||||| || | || Sbjct 776734 AATGTTTGGCAAGTTTTGGATGGAACCGTTGTCGGATATGATGTGGTTCTTCATTGCGTC 776675 Query 62339 ATTCCATAATTTTCTC---TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAA 62395 || ||| | | | | || ||| | | || | | ||||| || | ||||| Sbjct 776674 ATCCCAGA---TACCCAAGTCAACCAAATCACGCAGCAAGTATGGGTTCACAATCTGGAA 776618 Query 62396 TTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATT 62455 ||| || | | || | |||| ||| |||||| || || || || | | || || Sbjct 776617 TTCACCGGCAAGAACACGACGAGAGTAGATATTAGAAGTGTATGGCTCAAAACATTCGTT 776558 Query 62456 ATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCT 62515 | ||||| ||||||| || || ||||| ||||| ||||| ||||| | | ||||| Sbjct 776557 GTAACCCAAGATTTGAGATGTAGAGGCAGTTGGCATTGGTGCAACCAAAAGAGAGTTTCT 776498 Query 62516 AAGACCGTA 62524 | ||| || Sbjct 776497 CATACCATA 776489 >seq4 Length=1931745 Score = 187 bits (206), Expect = 3e-42 Identities = 753/1170 (64%), Gaps = 45/1170 (4%) Strand=Plus/Minus Query 62381 GTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62440 |||||| |||||||| || ||||| | ||| || |||||||| ||||| || || Sbjct 970301 GTTAACCACTTGGAACTCGCCAGAGAGTACCCTTCGAGTGTATATATTCGAAGTTATTGG 970242 Query 62441 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 || | ||||||| ||||| || || | || ||||| || ||||| ||| |||| Sbjct 970241 CTCGAAGCACTCATTGAACCCCAAGATCTGTGAGGTCGATGCTGTAGGCATTGGTCCCAC 970182 Query 62501 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCA 62560 ||||||| || || || || || | | || | |||||| | ||||||| | Sbjct 970181 CAATAAAGAGTTCCTTAGTCCATAGCGTTTTATATCATCTTTCATCAAGTCCCAATCGTA 970122 Query 62561 AAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGA 62620 | | ||| || | | |||| | ||| || || || || Sbjct 970121 CATGTTCGAAGGGTTATGATTCCACATATCGAATTGCAAAATCCCCTTTGAAGCTGGTGA 970062 Query 62621 TCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC--GCCTCTAAT 62678 ||| |||| | | ||| ||||| | || | ||| || | | | | || || || Sbjct 970061 CCCTTCATAACTCTTATAGGGTCCATACTCTTTAGCGAGCT--CTATTGAGGCTTCCAAG 970004 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTC--CGGGCTAT 62736 ||| ||| ||| || ||||||||||| || |||| | | || || || ||| || Sbjct 970003 GCAGCGTGATATATAGTTTCAAAGATGTTGATATTCAACTTTTTAGCGTCTTCGGACT-- 969946 Query 62737 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62796 |||| || || ||| || ||| || ||||| ||||| || ||||| | || | Sbjct 969945 CAAAGGGCAAACGTAACTCCATGAACAGATCTGCTAAACCTTGCACCCCAATTGCCATTG 969886 Query 62797 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATT--AATATCTAT 62854 |||||| | || ||| | | | || || | || || ||| || ||| || Sbjct 969885 GTCTATTTTTCAAATTGCTGGTCTTTGCCTCCTCCAAGGGGTAC--ATTCCAACATCAAT 969828 Query 62855 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT---- 62910 | ||| || | ||| || ||| |||||||| || || | || ||| | ||| Sbjct 969827 GACTTTGTTTAAATTCCTCGTAATCACTTTGACAACCTCGTGGAGCTTGCTATAATTCAT 969768 Query 62911 -----CAAATCGCCCATCTATTACAA-ACATGTT--CAATGCAACAGATGCCAGATTACA 62962 || || || || | ||| | ||| ||| || || || || |||||||| Sbjct 969767 CCACACAGATTCATCAACTGTCTCAACAAATGACGGCAAAGCCACGGAAGCTAGATTACA 969708 Query 62963 CACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 63022 || || | || | ||| ||| || | || ||| ||| || || | | || Sbjct 969707 AACAGCAATTTCTTCTGCAGAACTATACTGAACAATTTCACAGCATAGGTTTGAAGATTT 969648 Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 ||| ||||| || |||| ||| || ||||| |||||||| || ||||||||||| ||||| Sbjct 969647 GATTGTTCCCAAGTTTTTTTGGTTGCTCTTCTTGTTACAAGCGTCCTTATAAAGCATGAA 969588 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63141 ||| ||||||||| | || |||| ||| || ||||||| | ||| | || || | Sbjct 969587 TGGCCCACCAGTTTCCACTTGGCTCTCTAAAATGGCGTTCCAGA-GCCTCTGTGCTTTGA 969529 Query 63142 TTATAGATTTGTATCT---CCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGT 63198 | | || || | |||| ||| | ||| |||||| | | ||| || | Sbjct 969528 CTGTT--TTCATAGCAAGGCCTTCCTCGGT-GTACTTCTCATACAACCTCTTGAAGTCAT 969472 Query 63199 CTCCCCAAA---CATTG--TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTC 63253 |||| | ||||| ||| ||| | | ||| ||| | | | ||| || Sbjct 969471 CTCCATACGTCTCATTGAGTCC--TCTTGCC---TGATCAGGAGAGAAGAGATTCCATTC 969417 Query 63254 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGAT 63312 | | | ||| | |||| || |||||| |||||||| ||||| | || ||| || |||| Sbjct 969416 TTCATTATCTTGCACTTTTTCCATAAACAGATCAGGTATCCACAAGGC-ATAGAACAGAT 969358 Query 63313 CTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 63372 |||||| || ||||||| || || ||||| |||||| |||||| | | | || Sbjct 969357 CTCTTGCTCGCAGTTCCTCCTTCCCATGGTTCTTCCGAAGATCCAGGAACTCAAAGACAT 969298 Query 63373 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 63432 ||| |||||| |||||||||||||| || | | || |||| || || || || |||| Sbjct 969297 CAGCATGCCATGGTTCCAAGTATATTGCAAAGGCCCCTGGCCTCTTATTCCCACCTTGAT 969238 Query 63433 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATAC 63492 | | || || || || || ||| | |||||||||||||||| || || || || | | Sbjct 969237 CCACATACCTGGCTGTATTGTTAAACACTCTCAACATTGGAACTATTCCATTGGAAGTGC 969178 Query 63493 CATTGGTACCGGAGATATAGCCTCCACTGG 63522 |||| ||||| | ||||||| ||| |||| Sbjct 969177 CATTTGTACCAGCGATATAGGATCC-CTGG 969149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817544890960