Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq5 127 2e-24 seq4 111 1e-19 >seq6 Length=1261692 Score = 132 bits (146), Expect = 5e-26 Identities = 570/887 (64%), Gaps = 22/887 (2%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 |||||| || ||| |||| || | ||||| || || |||||||| | || || || | Sbjct 58799 CTTTTGGTAATCAGAGACTC-TCTTCTCGAAGAAGTTTGTCTTACCAGCAAGGGAGATGT 58741 Query 11397 ACTCCATAAAG-CTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTT 11455 |||||||||| | || || || ||| | ||| ||| || | ||| | | Sbjct 58740 TCTCCATAAAGTCGAATGGGTTTGTAT-CGTTGTAGAACTTCTTGTTACCAAGTGCAACG 58682 Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATA 11515 | |||||||| || |||| | || ||| |||| || ||| |||||||| | Sbjct 58681 AGCAATCTATCAGCACAGAATCTAACGTATTGACACATCAACTTACAGTTCATACCCAAG 58622 Query 11516 AGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 ||| | | |||| |||| |||| || |||| ||| || | || || || |||| Sbjct 58621 AGAGACGCTGGAAGAGCATCTGTAAAGTACTCTGATTCAATCTCGACAGCTTCGGTGATG 58562 Query 11576 ATCGACGTTATAACTTCCTTAGATGGTGGAT-GTAAT--AAATGTTTAAACATTAAACAC 11632 || | | || || | || ||| | || | || || ||||| ||||| Sbjct 58561 ATTCTCTCAACAATCTCT---GGTGCTGGCTTGTTCTTCAAGTGGGCAAACAACAAACAA 58505 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 || ||||| |||||||||||||| | | || | || ||||| || || || || Sbjct 58504 GCGAAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAGGTCAAACCT 58445 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 |||||||| |||| || || | |||||| || | || |||||||| || ||||| || Sbjct 58444 GGCATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAGAAGAAGATA 58385 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCTTGTTGCTAGATATC 11809 || || ||||| ||||| || || | ||| ||| || ||| | | | | ||| Sbjct 58384 CCTTCAACAGCAGCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCATCATCGGCAATC 58325 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 ||| | ||||||||||| ||||| || | ||| || ||||| || ||||| || Sbjct 58324 CATCTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAATGGCGTTGAAC 58265 Query 11870 AAATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTT 11927 || | | | || || || | | || || || || || || || | | Sbjct 58264 AA--GAACTCAGCCTCCTTTGGGTCCTTGATGTAGGTGTCGATCAACAAGGAGTAAGTCT 58207 Query 11928 CTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACT 11987 | || || || || ||||| || || || |||||||| || ||||||| | Sbjct 58206 CAGAGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAGCCTCTGGGATTT 58147 Query 11988 GTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAA 12047 | || || || | || |||| | || ||||| || || ||||| ||| || |||| Sbjct 58146 GAACCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCGTCAGAAGCGGCAA 58087 Query 12048 AAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT-AAT---TTATCCCAA 12103 |||| || || | | || ||| | |||| | | ||| ||| || | ||| Sbjct 58086 AAAAGGCCAGCACTCTTGAGATGAAGAAACGCTCGT-TCTCGTTCAATCTGTTGTTCCAG 58028 Query 12104 TCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGT 12163 || | ||||| ||||||||||| | || || | ||||| || ||| | | | Sbjct 58027 TCGTGCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTC 57968 Query 12164 TTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||| || ||| || ||||| |||||||||||||| | ||||| Sbjct 57967 TTATACGCTTGCCAAATCTCATGGTACTTAATAGGGAAGAGGACGAA 57921 >seq5 Length=1517892 Score = 127 bits (140), Expect = 2e-24 Identities = 473/737 (64%), Gaps = 6/737 (1%) Strand=Plus/Minus Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 ||||| || | |||||||| ||||| ||||||| ||||||||| || || | || || Sbjct 775965 CCCAAGTTCTTCTGATTGGACTTTTTGTTACAAGCATCTTTATAAAGCATGAATGGTGTA 775906 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCT 37899 || ||| | || ||||| | || | | ||| | || || || || || | Sbjct 775905 CCAGTTTCAGTCTGTGCCTCCAAGATCGCATACCAGAGCTTTTGAGCCTTCACAGTC--T 775848 Query 37900 TTAAtttttttCTTTGTT--TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 || | ||| | || || ||||| | | |||| ||| | ||| |||| || || Sbjct 775847 TTCTTCCTTTACCTTCTTGTTCGTACTTTGTATACAATGCTTCAAATTCATCACCATATG 775788 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 |||| || || | | || |||| | | || || |||||| | | | ||| | Sbjct 775787 CATCAGCCAAGCCAGTAGCCTCATTTGGAGAGAATAAAGTCCATTCACCGTTCTGTTCAA 775728 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077 | || | ||| || | ||| || | ||| || || | || ||||| | ||| | Sbjct 775727 CACGCTTCATGAACAGATCTGGAATCCACAAGGCTGGGAACAAATCACGAGCTCTGATCT 775668 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 |||| || || |||||||| | | ||||| || ||||| ||||||||||| | Sbjct 775667 CTTCCTTACCGTGGTTCTTTCTGATATCGATGAAATCAAAGATATCCGCGTGCCATGGCT 775608 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | || | | | ||| |||||||| || | ||| || || | | ||||| | | Sbjct 775607 CCAAGTACAAGGCAAATGCACCTGGTCTCTTGTTACCACCTTGGTCGACGTATCTTGCAG 775548 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATA 38257 |||||||| | | | | |||||| | | ||||||||| | ||||| |||| | | Sbjct 775547 TGTTATTAAAGACACGGACCATAGGAATCAAACCATTAGAGGTACCGTTGGTACCAGCGA 775488 Query 38258 TATAAGTACCCT-TAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 | | || ||||| || || ||||| || ||| || || ||||| || || Sbjct 775487 TGT-AGGACCCTGTACTTCTGATATTGTGAATGTGCAAACCGATACCACCAGCGGTCTTA 775429 Query 38317 GATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || || || || ||||| || || || || | |||||||| || ||| ||||| || Sbjct 775428 GAGATCAAGGCACATTGCTTCAAGGTGTCGTAGATACCTTCGATGGAGTCTTCCTTCATA 775369 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | | | |||||| ||||| || || |||||| || || || || || || ||| Sbjct 775368 GCAACGAGGAAACAAGAGGACATCTGTGGGCTTGGAGTACCAGCATTGAACAAAGTTGGA 775309 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 || || ||| |||| | ||| |||| || || ||||| || || | ||| Sbjct 775308 GAAGCGTGTGTGAAGTAACGTTCAGACATCAGGTTGTAAGTTTCAATCACGGACTTCATA 775249 Query 38497 TCACCGCCGTGAATACC 38513 || | ||||| ||||| Sbjct 775248 TCTCTACCGTGGATACC 775232 >seq4 Length=1931745 Score = 111 bits (122), Expect = 1e-19 Identities = 385/588 (65%), Gaps = 16/588 (3%) Strand=Plus/Minus Query 37703 CTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGAT 37762 |||||||||| ||||||| ||| ||| | |||| | || | ||| || || || | Sbjct 969717 CTAGATTACAAACAGCAATTTCTTCTGCAGAACTATACTGAACAATTTCACAGCATAGGT 969658 Query 37763 TACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTAT 37822 | ||| | ||||||||||| || |||| ||| || || ||||||| || |||| Sbjct 969657 TTGAAGATTTGATTGTTCCCAAGTTTTTTTGGTTGCTCTTCTTGTTACAAGCGTCCTTAT 969598 Query 37823 ATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTC 37882 | || || | ||| || ||| | ||| ||| | ||| | ||||| | || Sbjct 969597 AAAGCATGAATGGCCCACCAGTTTCCACTTGGCTCTCTAAAATGGCGTTCCAGAGCCTCT 969538 Query 37883 TTGCTTTAAC-GATCGCTTT--AAtttttttCTTTGTTTCGTA-TTCTATATATAATTTG 37938 |||||| || | | | | || || || || ||| |||| ||| || | Sbjct 969537 GTGCTTTGACTGTTTTCATAGCAAGGCCTTCCTCGGT---GTACTTCTC-ATACAACCTC 969482 Query 37939 TTAAAATCATTCCCCCATACATCGCAT--AATCCTGGA-CATTCGCATGGACACATTAGA 37995 || || |||| | |||||| || ||| | |||| | | || ||| | | ||| Sbjct 969481 TTGAAGTCAT--CTCCATACGTCTCATTGAGTCCTCTTGCCTGATCA-GGAGAGAAGAGA 969425 Query 37996 GACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA 38055 ||||||||||| | || || ||||||||| | |||||||| ||| || ||| Sbjct 969424 TTCCATTCTTCATTATCTTGCACTTTTTCCATAAACAGATCAGGTATCCACAAGGCATAG 969365 Query 38056 AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATC 38114 || | |||| | | || ||| || ||||| ||||| | ||| | || || || Sbjct 969364 AACAGATCTCTTGCTCGCAGTTCCTCCTTCCCATGGTTCTTCCG-AAGATCCAGGAACTC 969306 Query 38115 GAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACC 38174 || | |||||| ||||||||||| | || || | | || ||||| || |||| || Sbjct 969305 AAAGACATCAGCATGCCATGGTTCCAAGTATATTGCAAAGGCCCCTGGCCTCTTATTCCC 969246 Query 38175 TCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATT 38234 || |||| | ||| || |||| || ||| | | ||| ||||| || ||||| ||||| Sbjct 969245 ACCTTGATCCACATACCTGGCTGTATTGTTAAACACTCTCAACATTGGAACTATTCCATT 969186 Query 38235 AGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT 38282 || |||| ||| |||| | ||||| | |||| || | |||||| Sbjct 969185 GGAAGTGCCATTTGTACCAGCGATATAGGATCCCTGGGCCCTTATATT 969138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524759004080