Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq6 159 3e-34 >seq6 Length=1261692 Score = 159 bits (176), Expect = 3e-34 Identities = 546/842 (65%), Gaps = 13/842 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||| || ||| ||||| || || |||||||| || ||||| | || || || || Sbjct 58798 TTTTGGTAATCAGAGACTCTCTTCTCGAAGAAGTTTGTCTTACCAGCAAGGGAGATGTTC 58739 Query 13641 TCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||||| || ||||| ||| || | || | |||| | | || ||| | | | Sbjct 58738 TCCATAAAGTCGAATGGGTTTGTATCGTTGTAGA-ACTTCTTGTTA-CCAAGTGCAACGA 58681 Query 13699 GTAATCTATCAGCA-ATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATT 13757 | |||||||||||| | || || || |||||| |||| || | ||| |||||||| | Sbjct 58680 GCAATCTATCAGCACAGAATCT-AACGTATTGACACATCAACTTACAGTTCATACCCAAG 58622 Query 13758 AGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATA 13817 || | |||| || || || | ||| ||| || ||||| || | || Sbjct 58621 AGAGACGCTGGAAGAGCATCTGTAAAGTACTCTGATTCAATCTCGACAGCTTCGGTGATG 58562 Query 13818 ATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 || | || |||||| | || | || | || ||| | ||||| || Sbjct 58561 ATTCTCTCAACAATCTCTGGTGCTGGCTTGTTCTTCAAGTGGGCAAACAACAAACAAGCG 58502 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 ||||| || | || || || | | ||| | ||||| || || || || |||||| Sbjct 58501 AAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAGGTCAAACCTGGC 58442 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 ||||| |||| || || |||||||| || | || ||||| ||||| ||||| || || Sbjct 58441 ATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAGAAGAAGATACCT 58382 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| |||||||| || | | || ||| |||| || | | | | |||||| Sbjct 58381 TCAACAGCAGCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCATCATCGGCAATCCAT 58322 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 | |||||| |||| || || || ||| | || |||||||| || || || || Sbjct 58321 CTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAATGGCGTTGAACAAG 58262 Query 14118 TATTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | || | || || || |||| ||||| || || || | ||| || | |||| Sbjct 58261 AACTCAGCCTCCTTTGGGTCCTTG--ATGTAGGTGTCGATCAACAAGGAGTAAGTCTCAG 58204 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| ||||| ||||| ||||| || ||||| ||||| |||| || | ||| | Sbjct 58203 AGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAGCCTCTGGGATTTGAA 58144 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 | || | | || |||| |||| || || || || ||||| ||| ||| ||||||| Sbjct 58143 CCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCGTCAGAAGCGGCAAAAA 58084 Query 14296 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATCGG 14352 | |||| | || || ||| | |||| | | ||| | | || ||||| ||| Sbjct 58083 AGGCCAGCACTCTTGAGATGAAGAAACGCTCGTTCTCGTTCAATCTGTTGTTCCAGTCGT 58024 Query 14353 ATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14412 |||||||| || | ||| | || || | ||||| || ||| |||| || |||| Sbjct 58023 GCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTAT 57964 Query 14413 AC 14414 || Sbjct 57963 AC 57962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727958023800