Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq6 176 4e-39 >seq6 Length=1261692 Score = 176 bits (194), Expect = 4e-39 Identities = 546/840 (65%), Gaps = 9/840 (1%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||| || ||| ||||| || || || ||||| || ||||| | || || || || Sbjct 58798 TTTTGGTAATCAGAGACTCTCTTCTCGAAGAAGTTTGTCTTACCAGCAAGGGAGATGTTC 58739 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 |||||||| |||||||| ||||| | | | || | ||| ||| | | | Sbjct 58738 TCCATAAAGTCGAATGGGTTTGTATCGTTGTAGAACTTCTTGTTACCAAGTGCAACGAGC 58679 Query 13489 AATCTATCAGCA-ATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||||||||| | || || || |||||| |||| || | ||| |||||||| | || Sbjct 58678 AATCTATCAGCACAGAATCT-AACGTATTGACACATCAACTTACAGTTCATACCCAAGAG 58620 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 | |||| || || || | ||| ||| || ||||| ||| | || || Sbjct 58619 AGACGCTGGAAGAGCATCTGTAAAGTACTCTGATTCAATCTCGACAGCTTCGGTGATGAT 58560 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 ||| || ||| || | || | || | || ||| | ||||| || || Sbjct 58559 TCTCTCAACAATCTCTGGTGCTGGCTTGTTCTTCAAGTGGGCAAACAACAAACAAGCGAA 58500 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||| || | || || || | | ||| | ||||| || || || || |||||||| Sbjct 58499 ATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAGGTCAAACCTGGCAT 58440 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 ||| |||| || || |||||||| || | |||||||| ||||| ||||| || || || Sbjct 58439 CAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAGAAGAAGATACCTTC 58380 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||| |||||||| || | |||| ||| |||| || | | | | |||||| | Sbjct 58379 AACAGCAGCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCATCATCGGCAATCCATCT 58320 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 |||||| |||| || || || ||| | || ||||| || || ||||| || Sbjct 58319 CAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAATGGCGTTGAACAAGAA 58260 Query 13908 TTC--CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || || |||| ||||| || || || | ||| || | |||||| Sbjct 58259 CTCAGCCTCCTTTGGGTCCTTG--ATGTAGGTGTCGATCAACAAGGAGTAAGTCTCAGAG 58202 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 || ||||| || || ||||| || ||||| || || |||| |||| ||| ||| Sbjct 58201 TGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAGCCTCTGGGATTTGAACC 58142 Query 14026 TCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAAT 14085 || | | || |||| ||||||| || || || ||||| ||| ||| |||||||| Sbjct 58141 TCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCGTCAGAAGCGGCAAAAAAG 58082 Query 14086 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---TTTTTCCAATCGGCT 14142 |||| | || || ||| | |||| | | ||| | | || ||||| ||| Sbjct 58081 GCCAGCACTCTTGAGATGAAGAAACGCTCGTTCTCGTTCAATCTGTTGTTCCAGTCGTGC 58022 Query 14143 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATAC 14202 |||||||| || | ||| | || || | ||||| || ||| |||| || |||||| Sbjct 58021 AAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCAGCCTTCTTATAC 57962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588758123480