Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 seq1 109 4e-19 seq4 95.1 9e-15 >seq3 Length=2123196 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| || ||||| ||||| || ||||| |||||||| || Sbjct 1815514 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 1815573 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | || || ||||| || || || | ||||| | ||||||||| ||| Sbjct 1815574 AAAGTTCTACCATCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGG 1815633 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || ||| ||| || | || ||||| ||| || || Sbjct 1815634 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACC 1815693 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || ||||||||||| |||||||| || ||||| || ||||||||||| || Sbjct 1815694 TCCAAGGTAATGGTCTTACCTGTAAGGGTTTTGACGAAAATTTGCATCTT 1815743 >seq1 Length=2451740 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| || ||||| ||||| || ||||| |||||||| || Sbjct 160698 CCACCTCTCAATCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGAC 160639 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || || ||||| || ||||| | ||||| | ||||||||| |||| Sbjct 160638 AAGGTTCTGCCATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 160579 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || ||||| || ||| ||| ||| | || ||||| || || || Sbjct 160578 ATACCCTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCAACC 160519 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 || ||||||||||| ||||| |||| || || || || Sbjct 160518 TCCAAGGTAATGGTCTTACCGGTCAAGGTCTTAACGAA 160481 >seq4 Length=1931745 Score = 95.1 bits (104), Expect = 9e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||||||| | ||| || ||||| ||||| || ||||| |||||||| || Sbjct 933736 CCACCTCTCAATCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 933795 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | || || |||||||| |||||| | ||||| | ||| ||||| |||| Sbjct 933796 AAGGTTCTGCCATCCTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGA 933855 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 || || || ||||| || ||| ||| || | || ||||| || Sbjct 933856 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTC 933902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362179169101587