Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 210 2e-49 seq6 181 1e-40 seq4 143 3e-29 >seq5 Length=1517892 Score = 210 bits (232), Expect = 2e-49 Identities = 604/928 (65%), Gaps = 2/928 (0%) Strand=Plus/Minus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 ||| || || ||||| | ||||| ||||| ||||| | |||| || || | | || Sbjct 776056 AAGGGCAATGGATGCCAAGTTACAAACAGCAACCTCGTCTGGAGAAGAGTACTCGACAAT 775997 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTT 47995 ||| ||| | || | | ||||| ||||||| || | ||||| ||||| Sbjct 775996 CTCACAACACAAGTTCGAAGACTTGATGATACCCAAGTTCTTCTGATTGGACTTTTTGTT 775937 Query 47996 ACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGA 48055 ||| || || || |||||||| || ||||| |||||||| |||| | || | ||| | Sbjct 775936 ACAAGCATCTTTATAAAGCATGAATGGTGTACCAGTTTCAGTCTGTGCCTCCAAGATCGC 775877 Query 48056 TTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | ||| | | |||||| | | ||| ||||| || |||||||| || || Sbjct 775876 ATACCAGAGCTTTTGAGCCTTCACAGTCTTTCTTCCTTTACCTTCTTGTTCGTACTTTGT 775817 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 ||| || ||||||||||| ||||| ||| | | || |||| | ||||| ||| | Sbjct 775816 ATACAATGCTTCAAATTCATCACCATATGCATCAGCCAAGCCAGTAGCCTCATTTGGAGA 775757 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 | || | ||| || | | | || || | |||| || | |||||| ||||| | Sbjct 775756 GAATAAAGTCCATTCACCGTTCTGTTCAACACGCTTCATGAACAGATCTGGAATCCACAA 775697 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| || ||||| | || ||| | ||||| || || ||| || | | || | Sbjct 775696 GGCTGGGAACAAATCACGAGCTCTGATCTCTTCCTTACCGTGGTTCTTTCTGATATCGAT 775637 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | ||||| || |||||||| || || || | || | | ||||||||| || Sbjct 775636 GAAATCAAAGATATCCGCGTGCCATGGCTCCAAGTACAAGGCAAATGCACCTGGTCTCTT 775577 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||||| ||||| || | ||||| ||||| || ||| | || | | ||| || | | Sbjct 775576 GTTACCACCTTGGTCGACGTATCTTGCAGTGTTATTAAAGACACGGACCATAGGAATCAA 775517 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||| || |||| ||||| || | || || || || ||| ||||| ||| Sbjct 775516 ACCATTAGAGGTACCGTTGGTACCAGCGATGTAGGACCCTGTACTTCTGATATTGTGAAT 775457 Query 48476 -TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 || || ||| |||||||| || | ||||| || | ||||| | || | ||| || | Sbjct 775456 GTGCAA-ACCGATACCACCAGCGGTCTTAGAGATCAAGGCACATTGCTTCAAGGTGTCGT 775398 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 | || ||||| || || || ||||| | || |||||| ||||| || || Sbjct 775397 AGATACCTTCGATGGAGTCTTCCTTCATAGCAACGAGGAAACAAGAGGACATCTGTGGGC 775338 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 ||| || | ||| || || |||||||| || || | || | || || | || Sbjct 775337 TTGGAGTACCAGCATTGAACAAAGTTGGAGAAGCGTGTGTGAAGTAACGTTCAGACATCA 775278 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 || || |||||||| || || | ||||| | || ||||| || | ||||||| Sbjct 775277 GGTTGTAAGTTTCAATCACGGACTTCATATCTCTACCGTGGATACCGATGGCCACACGCA 775218 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTT 48774 | | || | || || | || ||| |||| || | | | | | || ||| | | Sbjct 775217 TCACCAAGTGCTGTGGACGCTCGGCAACTTTGCCGTTCACTCTGAGCAAGTAGGATCTCT 775158 Query 48775 CCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||||||| || |||||||| |||||||| Sbjct 775157 CCAATGTCTTGAAACCAAAGTAGTTGTA 775130 >seq6 Length=1261692 Score = 181 bits (200), Expect = 1e-40 Identities = 398/592 (67%), Gaps = 11/592 (2%) Strand=Plus/Minus Query 18951 AAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGA 19010 ||||| |||||| || ||||| |||| || ||||| | | ||||| || ||||| Sbjct 58517 AAACAACAAACAAGCGAAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGA 58458 Query 19011 AAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCC 19070 || || ||||| ||||||| ||||| || || ||||| || || || || ||||| || Sbjct 58457 GAAGGTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACC 58398 Query 19071 AGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 || ||||| |||||||| || || ||||||||||| ||||| ||| || | || || Sbjct 58397 GGAGAAGAAGATACCTTCAACAGCAGCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTC 58338 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || || ||||||| ||| ||||||||||||||||| || | |||||| || || || Sbjct 58337 ATCATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTC 58278 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 || | || || | || | ||| | || || || | || | || ||||| || Sbjct 58277 AATGGCGTTGAACAAGAACTCAGCCTCCTTTGGGTCCTTGATGTAGGTGTCGATCAACAA 58218 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| | || || || || || || || ||||| || || || || || | || Sbjct 58217 GGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAGC 58158 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 |||| || || || || | | || |||| ||||| || || || || || || || Sbjct 58157 CTCTGGGATTTGAACCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCGTC 58098 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTT----TAATAAAATGTTTTTCATCTGAGGTTA 19426 | ||| |||||||| || | || | || | | ||| | | | ||| | | | Sbjct 58097 AGAAGCGGCAAAAAAGGCCAGCAC-TCTTGAGATGAAGAAACGCTCGT--TCT-CGTTCA 58042 Query 19427 AT---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 || | ||||| || | | ||| || |||||||| | || || | ||||| || | Sbjct 58041 ATCTGTTGTTCCAGTCGTGCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGG 57982 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 ||||||| || || |||||| | ||| || ||| | || | ||||| || Sbjct 57981 AAGCCTCAGCCTTCTTATACGCTTGCCAAATCTCATGGTACTTAATAGGGAA 57930 >seq4 Length=1931745 Score = 143 bits (158), Expect = 3e-29 Identities = 600/936 (64%), Gaps = 38/936 (4%) Strand=Plus/Minus Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 || ||||||||||| ||||| | || | || | | |||| || | |||||| ||| Sbjct 969721 GAAGCTAGATTACAAACAGCAATTTCTTCTGCAGAACTATACTGAACAATTTCACAGCAT 969662 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCC 48005 || || | ||||||| || ||||| |||| || || | |||||||| |||||| Sbjct 969661 AGGTTTGAAGATTTGATTGTTCCCAAGTTTTTTTGGTTGCTCTTCTTGTTACAAGCGTCC 969602 Query 48006 TTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA 48065 || |||||||| || || |||||||| | || || | || | ||||| | Sbjct 969601 TTATAAAGCATGAATGGCCCACCAGTTTCCACTTGGCTCTCTAAAATGGCGTTCCAGAGC 969542 Query 48066 GTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATG---TTC------GTATTTAGTA 48116 || || || | || | ||| || || | ||| ||| || | Sbjct 969541 CTCTGTGCTTTGA--------CT-GTTTTCATAGCAAGGCCTTCCTCGGTGTACTTCTCA 969491 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 || ||| ||| || ||||| |||||| | || | || | || |||| | Sbjct 969490 TACAACCTCTTGAAGTCATCTCCATACGTCTCATTGAGTCCTCTTGCCTGATCAGGAGAG 969431 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | | ||| || |||| || || ||| | |||||| | ||| |||||||| | Sbjct 969430 AAGAGATTCCATTCTTCATTATCTTGCACTTTTTCCATAAACAGATCAGGTATCCACAAG 969371 Query 48237 GCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 || ||| || | ||| || | || ||||| || || ||| ||| | ||| || || Sbjct 969370 GC-ATAGAACAGATCTCTTGCTCGCAGTTCCTCCTTCCCATGGTTCTTCCGAAGATCCAG 969312 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 || || | | |||||||||||||||||| || |||||||| | | ||||| | || Sbjct 969311 GAACTCAAAGACATCAGCATGCCATGGTTCCAAGTATATTGCAAAGGCCCCTGGCCTCTT 969252 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 ||| || |||||||| | ||| ||||| ||||||||| | ||||| |||||||| || || Sbjct 969251 ATTCCCACCTTGATCCACATACCTGGCTGTATTGTTAAACACTCTCAACATTGGAACTAT 969192 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA- 48474 ||||| || | ||||| || || | ||||| ||| || |||||||| | | Sbjct 969191 TCCATTGGAAGTGCCATTTGTACCAGCGATATAGGATCCCTGGGCCCTTATATT--TGAG 969134 Query 48475 --TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGGTAT 48531 || || || | ||||| || || || || || ||||| | ||||| | | Sbjct 969133 GCGTG-TATCCCCAAGCCACCAGCAGCCTTCGAAATGAGTGCACATTTATGTAAGGAT-T 969076 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 || || || ||||| || || || || | || || || |||| | Sbjct 969075 TGTATATCCCATCTATTGAGTCGTCCATTATCCCCAGGAGGAAGCACGAGGACA----AG 969020 Query 48592 GATGACA----AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCT 48647 ||| || |||||||| || || || || ||||| || || |||| | ||| Sbjct 969019 AATGGCATGGGTGTTCCTGAGTTGAACAACGTCGGAGACGCGTGTGTAAATAACCTCTGG 968960 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGAT 48707 || | || | ||| || | | | |||| ||||| ||| |||||| || | || | Sbjct 968959 GACATCATGTCATAGGTCTGGACAGCAGACTCTATGTCCTTACCATGTATCCCCA-AGCT 968901 Query 48708 -ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 |||||||| |||||| | |||||| ||||| | || || | |||| | ||| Sbjct 968900 GACACGCATAAACATAAACTGAGGTGTTTCAGCTATCAACGCATCAACCTTCAGGAAATA 968841 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 ||| |||| ||| || | | | |||| |||||||| Sbjct 968840 TGACTTTTGCAAAGTCATGATAGCAAAGTAGTTGTA 968805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108750815480