Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26]
7 sequences; 12,707,304 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 4e-29
seq3 105 1e-17
seq1 98.7 1e-15
>seq6
Length=1261692
Score = 143 bits (158), Expect = 4e-29
Identities = 374/559 (67%), Gaps = 17/559 (3%)
Strand=Plus/Minus
Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211
|| ||||| || ||||| |||||||||||||| || | | | || || |||||| ||
Sbjct 58513 AACAAACAAGCGAAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAG 58454
Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271
|| || || ||||| | |||||| || || | |||||| || || ||||| || ||
Sbjct 58453 GTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAG 58394
Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330
||||| ||||| ||||| ||| || || || | | ||| || ||||| | | | |
Sbjct 58393 AAGAAGATACCTTCAACAGCA-GCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCA-T 58336
Query 18331 GCTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389
|| | |||||| | ||||| || | | ||||| || || | || |
Sbjct 58335 CATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAA 58276
Query 18390 TAGCATTAAAC---AAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446
| || || ||| || ||| | | |||||| || || || || |||||||| ||||
Sbjct 58275 TGGCGTTGAACAAGAACTCAGC--CTCCTTTGG-GTCCTTGATGTAGGTGTCGATCAACA 58219
Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506
| || || | ||||| || ||| | ||||| ||||| || | ||| || | |||
Sbjct 58218 AGGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAG 58159
Query 18507 CCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565
|||| ||||| ||||| ||| | | || |||| ||||| ||||| || || ||||||
Sbjct 58158 CCTCTGGGAT-TTGAACCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCG 58100
Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA- 18623
|||| || || ||||| |||| || | || | ||||| || || || || |
Sbjct 58099 TCAGAAGCGGCAAAAAAGGCCAGCAC-TCTTGAGATGAAGAAACGCTCGTTCTCGTTCAA 58041
Query 18624 --GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681
|||||||| || | | ||| ||||||| ||||| || || | ||||| || ||
Sbjct 58040 TCTGTTGTTCCAGTCGTGCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGA 57981
Query 18682 TGATTCGGCCTGTTTGTAC 18700
| || |||| || |||
Sbjct 57980 AGCCTCAGCCTTCTTATAC 57962
>seq3
Length=2123196
Score = 105 bits (116), Expect = 1e-17
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879
|| |||||||| || | ||||| | || || || || ||||| || || || ||
Sbjct 1815743 AAGATGCAAATTTTCGTCAAAACCCTTACAGGTAAGACCATTACCTTGGAGGTTGAGTCC 1815684
Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939
|| || | ||| ||||| || || || || || ||||| || || || |||||
Sbjct 1815683 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATCCCACCAGAC 1815624
Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999
|||||||||||||| | |||||||||||| | || ||| |||||||| || || ||
Sbjct 1815623 CAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 1815564
Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| | ||||||| ||| | || ||||| || || | ||||| ||||| ||||
Sbjct 1815563 A--ACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTG 1815512
>seq1
Length=2451740
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/217 (71%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895
|||| || ||||| || || || ||||| || || || || ||||| | ||| |
Sbjct 160485 TTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCCTCTGACACCATTGACA 160544
Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955
| || || || || ||||| || || || || || ||||| |||||||||||||| |
Sbjct 160545 ATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATTCCACCAGACCAACAAAGATTGATCT 160604
Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013
||| |||||||| | || ||| |||||| || || || || | | ||||||| ||
Sbjct 160605 TTGCTGGTAAGCAATTGGAGGATGGCAGAACCTTGTCTGACTACA--ACATCCAAAAGGA 160662
Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| | || ||||| || || | ||||| ||||| |||
Sbjct 160663 GTCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGT 160699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871935961200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |