Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq6 143 4e-29 seq3 105 1e-17 seq1 98.7 1e-15 >seq6 Length=1261692 Score = 143 bits (158), Expect = 4e-29 Identities = 374/559 (67%), Gaps = 17/559 (3%) Strand=Plus/Minus Query 18152 AATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAAC 18211 || ||||| || ||||| |||||||||||||| || | | | || || |||||| || Sbjct 58513 AACAAACAAGCGAAATCGGTGTGTAAACCTTCGTCACGGCAAATCAACTCGTTAGAGAAG 58454 Query 18212 GTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAA 18271 || || || ||||| | |||||| || || | |||||| || || ||||| || || Sbjct 58453 GTCAAACCTGGCATCAAACCTCTCTTCTTCAACCAAAAGATGGAGGCGAATGAACCGGAG 58394 Query 18272 AAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT 18330 ||||| ||||| ||||| ||| || || || | | ||| || ||||| | | | | Sbjct 58393 AAGAAGATACCTTCAACAGCA-GCAAAAGCAACGAGTCTCTCTGCAAATAGGGCGTCA-T 58336 Query 18331 GCTCAG-TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTA 18389 || | |||||| | ||||| || | | ||||| || || | || | Sbjct 58335 CATCGGCAATCCATCTCAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGGTTTCAA 58276 Query 18390 TAGCATTAAAC---AAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | || || ||| || ||| | | |||||| || || || || |||||||| |||| Sbjct 58275 TGGCGTTGAACAAGAACTCAGC--CTCCTTTGG-GTCCTTGATGTAGGTGTCGATCAACA 58219 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | || || | ||||| || ||| | ||||| ||||| || | ||| || | ||| Sbjct 58218 AGGAGTAAGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAACCCATAGAAGCACTTAG 58159 Query 18507 CCTC-GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCG 18565 |||| ||||| ||||| ||| | | || |||| ||||| ||||| || || |||||| Sbjct 58158 CCTCTGGGAT-TTGAACCTCTGCAGAGAAGTTTTCAACCAAGTTCTCGTTGACGATACCG 58100 Query 18566 TCAGCAGATGCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA- 18623 |||| || || ||||| |||| || | || | ||||| || || || || | Sbjct 58099 TCAGAAGCGGCAAAAAAGGCCAGCAC-TCTTGAGATGAAGAAACGCTCGTTCTCGTTCAA 58041 Query 18624 --GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGA 18681 |||||||| || | | ||| ||||||| ||||| || || | ||||| || || Sbjct 58040 TCTGTTGTTCCAGTCGTGCAAATCCTTTGATAAATCAATCTCCTCGGCAGTCCAGAAGGA 57981 Query 18682 TGATTCGGCCTGTTTGTAC 18700 | || |||| || ||| Sbjct 57980 AGCCTCAGCCTTCTTATAC 57962 >seq3 Length=2123196 Score = 105 bits (116), Expect = 1e-17 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | ||||| | || || || || ||||| || || || || Sbjct 1815743 AAGATGCAAATTTTCGTCAAAACCCTTACAGGTAAGACCATTACCTTGGAGGTTGAGTCC 1815684 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| ||||| || || || || || ||||| || || || ||||| Sbjct 1815683 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATCCCACCAGAC 1815624 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | |||||||||||| | || ||| |||||||| || || || Sbjct 1815623 CAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTAC 1815564 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| ||| | || ||||| || || | ||||| ||||| |||| Sbjct 1815563 A--ACATCCAAAAGGAGTCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGTG 1815512 >seq1 Length=2451740 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || ||||| || || || ||||| || || || || ||||| | ||| | Sbjct 160485 TTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCCTCTGACACCATTGACA 160544 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || || || || || ||||| |||||||||||||| | Sbjct 160545 ATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATTCCACCAGACCAACAAAGATTGATCT 160604 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | || ||| |||||| || || || || | | ||||||| || Sbjct 160605 TTGCTGGTAAGCAATTGGAGGATGGCAGAACCTTGTCTGACTACA--ACATCCAAAAGGA 160662 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | | || ||||| || || | ||||| ||||| ||| Sbjct 160663 GTCCACTCTTCACTTGGTTCTCAGATTGAGAGGTGGT 160699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871935961200