Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26]
7 sequences; 12,707,304 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq7 141 3e-28
seq5 100 8e-16
seq1 98.7 3e-15
>seq7
Length=1265681
Score = 141 bits (156), Expect = 3e-28
Identities = 228/326 (70%), Gaps = 4/326 (1%)
Strand=Plus/Plus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
||||||| | ||| || ||||||| ||||| | |||||| ||||||||||||||
Sbjct 1008257 ATCATAATGGACCATGATATCTTCCAAGGCCTTGACAAGACGACGTTGAATATAACCAGT 1008316
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| || ||| || || || |||||||| | ||| |||||||||||||||| |||||| |
Sbjct 1008317 TTCAGCTGTCTTCACGGCAGTATCAATCAAACCCTCACGACCACCCATAGCGTGGAAGTA 1008376
Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732
| |||| ||| | || | | | | ||| | || |||||||| | ||| ||
Sbjct 1008377 GAATTCTTGTGGTGTCAATCCTCTTAAATAAGAGTTTTCGACGAAACCCTTTGACTCTGG 1008436
Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792
|| | || ||||| ||||||||||| ||| | || || ||||||| | |||||
Sbjct 1008437 AGAGTAATCATCCTTGGAAAAGTGTGGCAAGGTACGGTCAGCAAAGCCGTAAGCAATACG 1008496
Query 302793 CTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACT 302852
|| || ||||| ||| || |||| || | |||||| | ||| || ||| |
Sbjct 1008497 TTTACCTTCAACCGACTGTTGGCCCACACAAGCGGACATCTGGGCAATGTT--AATGAAA 1008554
Query 302853 G--CCCTTGGAGCCAGCATTTACCAT 302876
| |||||||| |||||| | |||||
Sbjct 1008555 GAACCCTTGGAACCAGCACTCACCAT 1008580
Score = 122 bits (134), Expect = 3e-22
Identities = 112/141 (79%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 301812 CAGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871
|| |||||||| | ||| ||||||||| || || || |||||| || ||||||||
Sbjct 1007501 CAAAATTTCTTTCAAACGAGGAACACCAGATGTAACCTT---CTTGGAAGCCACACCAGC 1007557
Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931
||||||||||||||||| || | |||||||| ||||||||||||| ||| || || |
Sbjct 1007558 AAAGTGGAAAGTATTCAAGGTCATTTGAGTAGCTGGCTCACCAATAGATTGAGCGGCCAC 1007617
Query 301932 CATACCAACCATTTCTCCTGG 301952
||||||||||| || |||||
Sbjct 1007618 AATACCAACCATCTCACCTGG 1007638
>seq5
Length=1517892
Score = 100 bits (110), Expect = 8e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
||| || ||||||||||| |||| ||| ||| ||||||| | || || |||||||| ||
Sbjct 776008 GTACTCGACAATCTCACAACACAAGTTCGAAGACTTGATGATACCCAAGTTCTTCTGATT 775949
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
|| || ||||||||||||| || || || ||| |||| || || || || |||||||
Sbjct 775948 GGACTTTTTGTTACAAGCATCTTTATAAAGCATGAATGGTGTACCAGTTTCAGTCTGTGC 775889
Query 155750 GTCCA 155754
||||
Sbjct 775888 CTCCA 775884
>seq1
Length=2451740
Score = 98.7 bits (108), Expect = 3e-15
Identities = 218/325 (67%), Gaps = 4/325 (1%)
Strand=Plus/Plus
Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080
|||| |||||||| ||||| ||||| || | || || | |||| ||| |||
Sbjct 769344 CTTTCTTTACCAATGGCATCGATTTCATCGACAAAGATGATTGCTGGAGCCATTTTTCTA 769403
Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140
||| || ||||| || | ||||| || || || | ||| ||| |||| || |||||
Sbjct 769404 GCAGTTTTGAATAAGTCACGAACACGAGAGGCACCGACACCGACAAACATCTCAACAAAC 769463
Query 289141 TCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200
|||||| | || || | ||| | ||| ||||| || || ||| ||||||
Sbjct 769464 TCAGAACCAGAAACCGAGAGGAAAGGGACACCGGCTTCACCAGCCGTGGCCTTCGCCAAC 769523
Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260
| |||||||| || || |||||||| ||| | | || |||| | ||||| ||
Sbjct 769524 AAGGTCTTACCGGTACCTGGTGGTCCAGATAAAATGGCACCTCTTGGAATCTTTGCACC- 769582
Query 289261 GCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318
|| ||| ||| || ||||| | || || ||||| |||| |||| || || | |
Sbjct 769583 -CAATCTTTCATACTTTTCAGGACGTTTCAAGAATTCAACAAATTCCATAATCTCCTCCT 769641
Query 289319 TTGCCTCATCACATCCTGCTACATC 289343
| ||||||||||| || || || ||
Sbjct 769642 TGGCCTCATCACAACCGGCAACGTC 769666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817467996359
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |