Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 154 2e-32 seq4 100 3e-16 >seq5 Length=1517892 Score = 154 bits (170), Expect = 2e-32 Identities = 334/489 (68%), Gaps = 12/489 (2%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAA-GTT-CTTCACGCACGCGACGCCGACCCTTTTCA 19223 || || ||| |||||||| | ||| ||| |||||| ||||| | || || | |||| Sbjct 775265 GAAACTTACAACCTGATGT--CTGAACGTTACTTCACACACGCTTCTCCAACTTTGTTCA 775322 Query 19224 ACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACA 19283 | || ||||| | ||| |||||||| |||||||| || ||||||||||| ||| Sbjct 775323 ATGCTGGTACTCCAAGCCCACAGATGTCCTCTTGTTTCCTCGTTGCTATGAAGGAAGACT 775382 Query 19284 GCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGG 19343 ||| || || |||||||| || | ||| | || || ||||| ||| | || | Sbjct 775383 CCATCGAAGGTATCTACGACACCTTGAAGCAATGTGCCTTGATCTCTAAGACCGCTGGTG 775442 Query 19344 GTATCGGGATCCAC-TGCTCGAATATCCG--GTCGAGTGGTAC-ACGAATCAATGGGACG 19399 ||||||| | ||| | | | |||||| | || || ||| | || ||| ||| || Sbjct 775443 GTATCGGTTTGCACATTCAC-AATATCAGAAGTACAG-GGTCCTAC--ATCGCTGGTACC 775498 Query 19400 AACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTAC 19459 ||||| | | ||| | | || ||| |||| ||||| || ||||| || || ||| Sbjct 775499 AACGGTACCTCTAATGGTTTGATTCCTATGGTCCGTGTCTTTAATAACACTGCAAGATAC 775558 Query 19460 GTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCAC 19519 ||| |||| || || ||| | || | || ||| | ||| | |||||||||||| Sbjct 775559 GTCGACCAAGGTGGTAACAAGAGACCAGGTGCATTTGCCTTGTACTTGGAGCCATGGCAC 775618 Query 19520 GCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGT 19579 ||||| || | |||||| |||| | | |||||| ||| | || ||||| | | Sbjct 775619 GCGGATATCTTTGATTTCATCGATATCAGAAAGAACCACGGTAAGGAAGAGATCAGAGCT 775678 Query 19580 CGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGAC 19639 || || | ||| | |||||||||||||| || || |||||| || ||||| || || Sbjct 775679 CGTGATTTGTTCCCAGCCTTGTGGATTCCAGATCTGTTCATGAAGCGTGTTGAACAGAAC 775738 Query 19640 GAAGAATGG 19648 | |||||| Sbjct 775739 GGTGAATGG 775747 Score = 122 bits (134), Expect = 1e-22 Identities = 294/439 (67%), Gaps = 11/439 (3%) Strand=Plus/Plus Query 20390 GTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAG 20449 || || || ||||| || ||||| || | || ||| |||| ||||||| ||| ||| Sbjct 776513 GTTGCACCAATGCCAACTGCCTCTACATCTCAAATCTTGGGTTACAACGAATGTTTTGAG 776572 Query 20450 CCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAAC 20509 || ||||| | || ||||||| |||||| || |||||||| ||| || || ||| Sbjct 776573 CCATACACTTCTAATATCTACTCTCGTCGTGTTCTTGCCGGTGAATTCCAGATTGTGAAC 776632 Query 20510 AAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAA 20569 || || | || || ||| | | | ||| ||| | ||| ||||| | Sbjct 776633 CCATACTTGCTGCGTGATTTGGTTGACTTGGGTATCTGGGATGACGCAATGAAGAACCAC 776692 Query 20570 AT--TGTCCGAGCCGGCGGGAGCGTCCAGGCATTGG---ATATCCCCCAGAACCTCAAGG 20624 || | ||||| | ||| | |||| ||| | || || || | | |||| Sbjct 776693 ATCATATCCGA--CAACGGTTCCATCCAAAACTTGCCAAACATTCCAAAGCAATTGAAGG 776750 Query 20625 ACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATC 20684 || | |||| |||||||||||||||| | || |||| |||||| || ||||| ||||||| Sbjct 776751 ACTTGTACAAGACCGTATGGGAAATCTCTCAAAAGACCATCATTGATATGGCTGCCGATC 776810 Query 20685 GCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCAT-GGAGAATCCGAGCC-T 20742 | | || ||||||||||| || || || | || ||||| ||| || | || | Sbjct 776811 GTGCTGCTTACATCGACCAATCTCAATCTTTGAA--CATTCATATCAGAGCCCCAACCAT 776868 Query 20743 GGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTA 20802 || || || | || ||||| | ||||||||| | ||||| | ||||| || ||||| Sbjct 776869 GGGTAAACTCACGTCGATGCACTTCTACGGCTGGAAGAAGGGCTTGAAGACCGGTATGTA 776928 Query 20803 CTATCTGCGGACCCGAGCC 20821 ||| || | || | |||| Sbjct 776929 CTACTTGAGAACACAAGCC 776947 Score = 107 bits (118), Expect = 2e-18 Identities = 550/860 (64%), Gaps = 18/860 (2%) Strand=Plus/Minus Query 79036 ATGAAAGTCGGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAA 79095 ||||||| || ||| | ||||||| ||| || || || |||||| || ||| Sbjct 776067 ATGAAAGCTGGAAGGGCAATGGATGCCAAGTTACAAACAGCAACCTCGTCTGGAGAAGAG 776008 Query 79096 ACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTG 79155 ||||| || || ||||| || || ||||||||| | || | ||||||||| ||| Sbjct 776007 TACTCGACAATCTCACAACACAAGTTCGAAGACTTGATGATACCCAAGTTCTTCTGATTG 775948 Query 79156 CTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTC 79215 ||| | |||||| || || || || |||| | || || || || ||| ||| | Sbjct 775947 GACTTTTTGTTACAAGCATCTTTATAAAGCATGAATGGTGTACCAGTTTCAGTCTGTGCC 775888 Query 79216 TTGA-GAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCG--ACCCTGT 79272 | | || ||| | ||||| | | ||| ||| ||| | | || ||| | | Sbjct 775887 TCCAAGATCGCA-TACCAGAGCTTTTGAGCCTTCACAGTCTT--TCTTCCTTTACCTTCT 775831 Query 79273 GCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGG 79332 ||||| | ||||| | | || | || ||||| |||| | || ||| | Sbjct 775830 TGTTCGTACTTTGTATACAATGCTTCAAATTCATCACCATATGCATCAGCCAAGCCAGTA 775771 Query 79333 CACTCGTGCGGGCACA-TCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAG 79391 ||| | || | | | | || ||| || ||| || ||||| || |||||| || Sbjct 775770 GCCTCATTTGGAGAGAATAAAGT-CCATTCACCGTTCTGTTCAACACGCTTCATGAACAG 775712 Query 79392 GTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTT 79451 || || ||||||| ||| | ||| | || || | ||||| || | || ||||| Sbjct 775711 ATCTGGAATCCACAAGGCTGGGAACAAATCACGAGCTCTGATCTCTTCCTTACCGTGGTT 775652 Query 79452 CAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAA 79511 | | | |||| || || | ||| || |||||||| ||||||| || | ||| || Sbjct 775651 CTTTCTGATATCGATGAAATCAAAGATATCCGCGTGCCATGGCTCCAAGTACAAGGCAAA 775592 Query 79512 CGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCG 79571 | ||| | |||| || || |||| |||||| | || ||||| || || || || Sbjct 775591 TGCACCTGGTCTCTTGTTACCACCTTGGTCGACGTATCTTGCAGTGTTATTAAAGACACG 775532 Query 79572 GAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGT-GTACCGCTCG 79630 || ||| || | | || | | | ||||| || || ||| || | ||| || Sbjct 775531 GACCATAGGAATCAAACCATTAGAGGTACCGTTGGTACCAGCGAT--GTAGGACC-CTGT 775475 Query 79631 CC--CGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGC 79687 | | || || | | | ||| | ||||| || || | ||| ||||| || | Sbjct 775474 ACTTCTGATATT-GTGAATGTGCAAACCGATACCACCAGCGGTCTTAGAGATCAAGGCAC 775416 Query 79688 ACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC 79747 | | ||| | || |||||||| || ||||| ||||| ||||||||||| || ||||| | Sbjct 775415 ATTGCTTCAAGGTGTCGTAGATACCTTCGATGGAGTCTTCCTTCATAGCAACGAGGAAAC 775356 Query 79748 AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGA 79807 | |||||||||||| | ||||| || ||||| | || || | ||||| |||| Sbjct 775355 AAGAGGACATCTGTGGGCTTGGAGTACCAGCATTGAACAAAGTTGGAGAAGCGTGTGTGA 775296 Query 79808 AG-AACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGG 79866 || ||| || | |||||| | ||| || || | ||| | | || |||||| Sbjct 775295 AGTAACGTTCAG-ACATCAGGTTGTAAGTTTCAATCACGGACTTCATATCTCTACCGTGG 775237 Query 79867 ATGCCGACCGCGACGCGCAT 79886 || |||| || || ||||| Sbjct 775236 ATACCGATGGCCACACGCAT 775217 Score = 104 bits (114), Expect = 3e-17 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||||| ||| |||||||| || ||||| | ||||||||||| ||||| | |||||| Sbjct 776942 GTGTTCTCAAGTAGTACATACCGGTCTTCAAGCCCTTCTTCCAGCCGTAGAAGTGCATCG 776883 Query 78248 TCGACAGCTTGGCCA-GACTCGGGTTCTCC-ATGAAGATGTTGAGCGACTGGGACTGGTC 78305 || || || ||| | | ||| ||| ||||| |||| | || || || ||||| Sbjct 776882 ACGTGAGTTTACCCATGGTTGGGGCTCTGATATGAA--TGTTCAAAGATTGAGATTGGTC 776825 Query 78306 GATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGAT 78365 |||||| ||| | || ||||| ||||| || |||| | |||||| | || ||||| | Sbjct 776824 GATGTAAGCAGCACGATCGGCAGCCATATCAATGATGGTCTTTTGAGAGATTTCCCATAC 776765 Query 78366 GGTCCGGTAAATGGCCTTCA 78385 |||| ||| | | |||||| Sbjct 776764 GGTCTTGTACAAGTCCTTCA 776745 >seq4 Length=1931745 Score = 100 bits (110), Expect = 3e-16 Identities = 134/181 (74%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 20630 TACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGC 20689 |||| |||||||||||| ||||| ||| | | || ||| | |||| ||| || || Sbjct 970425 TACAAGACCGTATGGGAGATCCCTCAGCGCACAGTAATTGACCTCGCGGTCGACCG-TGC 970483 Query 20690 GCC-TACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAA-TCCGAGCCTGGCGA 20747 ||| | ||||||||| ||||| || | || | | ||| ||||| ||| | | | || Sbjct 970484 GCCTTTCATCGACCAATCCCAATCCATGAACATTTACAT-GAGAAGTCCCACTGTTGGGA 970542 Query 20748 AGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATC 20807 |||| | ||||||||| | ||||| ||| | ||||| |||||||| || |||||||||| Sbjct 970543 AGCTAACCTCCATGCACTTCTACGGATGGAAAAAGGGACTCAAGACAGGGATGTACTATC 970602 Query 20808 T 20808 | Sbjct 970603 T 970603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 301/462 (65%), Gaps = 8/462 (2%) Strand=Plus/Minus Query 78189 TGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACT 78248 ||||| | ||||||||| || |||||||| ||||| ||||||||||| | |||||| Sbjct 970610 TGTTCTGAGATAGTACATCCCTGTCTTGAGTCCCTTTTTCCATCCGTAGAAGTGCATGGA 970551 Query 78249 CGACAGCTTGGCCAGACTCGG-GTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | ||||| | | | | || |||| |||| | ||||| | || ||||| ||||||| Sbjct 970550 GGTTAGCTTCCCAACAGTGGGACTTCT-CATGTAAATGTTCATGGATTGGGATTGGTCGA 970492 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGG 78367 || | | | |||||| |||| | ||| || || | || || |||||||| | || Sbjct 970491 TGAAAGGCGCACGGTCGACCGCGAGGTCAATTACTGTGCGCTGAGGGATCTCCCATACGG 970432 Query 78368 TCCGGTAAATGGCCTTCA---GCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGG 78424 || ||| | | |||| || | |||||| | || | | || || Sbjct 970431 TCTTGTACAGCTCTTTCAAAGTCTGTGGAATGATGTCAATGTTCTGGATGGAACCTTCGT 970372 Query 78425 C-TCGCACAATTTCATTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGG 78483 | ||| |||||| |||||| || | ||| ||| | || |||||| Sbjct 970371 CGTCG-ACAATTCGATTCTTCATATCCTGGTCCCATAACCCAAGCTCGATAAGATCATTT 970313 Query 78484 ACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTG 78543 |||| || | ||||| || ||||||||| | || || || ||| || || Sbjct 970312 ACCAAGTATCTGTTAACCACTTGGAACTCGCCAGAGAGTACCCTTCGAGTGTATATATTC 970253 Query 78544 GTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGC 78603 | || |||||||| ||| ||| ||||| |||||| | |||||| || || ||| Sbjct 970252 GAAGTTATTGGCTCGAAGCACTCATTGAACCCCAAGATCTGTGAGGTCGATGCTGTAGGC 970193 Query 78604 ATGGGTGCGACCAGTAGAGAATTCCGAAGACCAT-GCGTCTT 78644 || ||| | |||| || ||| |||| || |||| |||| || Sbjct 970192 ATTGGTCCCACCAATAAAGAGTTCCTTAGTCCATAGCGTTTT 970151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524752004080