Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 140 4e-28 seq3 136 5e-27 seq5 120 3e-22 seq4 107 2e-18 >seq1 Length=2451740 Score = 140 bits (154), Expect = 4e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| | ||||| ||||| ||||| | ||||||||||| ||| | ||| Sbjct 160480 CTTCGTTAAGACCTTGACCGGTAAGACCATTACCTTGGAGGTTGAGTCCTCTGACACCAT 160539 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || || ||||||||||| ||||| |||||||| || | | Sbjct 160540 TGACAATGTCAAGTCCAAGATCCAAGACAAGGAGGGTATTCCACCAGACCAACAAAGATT 160599 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || ||||||||||||||| | ||||||| | ||| | | ||||| || ||||||| Sbjct 160600 GATCTTTGCTGGTAAGCAATTGGAGGATGGCAGAACCTTGTCTGACTACAACATCCAAAA 160659 Query 27594 GGAATCCACTCTTCA 27608 ||| ||||||||||| Sbjct 160660 GGAGTCCACTCTTCA 160674 >seq3 Length=2123196 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || ||||| || ||||| ||||| | ||||||||||| Sbjct 1815740 ATGCAAATTTTCGTCAAAACCCTTACAGGTAAGACCATTACCTTGGAGGTTGAGTCCTCC 1815681 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| | || || |||||||| ||||| || || |||||||| Sbjct 1815680 GACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATCCCACCAGACCAA 1815621 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| ||||||||| | ||||||| | | || | | ||||| || Sbjct 1815620 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAGGATGGTAGAACTTTGTCTGACTACAAC 1815561 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||||||||| ||||||||||| Sbjct 1815560 ATCCAAAAGGAGTCCACTCTTCA 1815538 >seq5 Length=1517892 Score = 120 bits (132), Expect = 3e-22 Identities = 132/172 (77%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT- 80105 |||||||| || ||||| | |||||||||||||||||| | |||||| || |||| || Sbjct 776931 TAGTACATACCGGTCTTCAAGCCCTTCTTCCAGCCGTAGAAGTGCATCGACGTGAGTTTA 776872 Query 80106 CGCAAGTGTGGGGTTCTCC-ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCC 80164 | || | ||||| ||| ||||| |||||| ||| ||||| || |||| |||| Sbjct 776871 CCCATGGTTGGGGCTCTGATATGAA--TGTTCAAAGATTGAGATTGGTCGATGTAAGCAG 776814 Query 80165 CACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||||| || ||||| ||||| || | |||||| | ||||||||||| || Sbjct 776813 CACGATCGGCAGCCATATCAATGATGGTCTTTTGAGAGATTTCCCATACGGT 776762 >seq4 Length=1931745 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 ||||||| || ||| | ||||| || | ||| | || || |||||||||||||| | Sbjct 933916 AGGTTGAATCCTCTGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTA 933857 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 |||| ||||||||||| | | ||||| |||||||| ||| | ||||||| | ||| Sbjct 933856 TTCCACCAGACCAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAGGATGGCAGAACCT 933797 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 | | ||||| || | |||||||| ||||||||||| Sbjct 933796 TGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCA 933760 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 80044 AGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGC 80103 ||||||||||| || |||||||| ||||| ||||| ||||| | |||||| || | ||| Sbjct 970603 AGATAGTACATCCCTGTCTTGAGTCCCTTTTTCCATCCGTAGAAGTGCATGGAGGTTAGC 970544 Query 80104 TTCGCAAGTGTGGG-GTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGC 80162 ||| ||| ||||| |||| |||| | ||||||| || || || || |||||||| Sbjct 970543 TTCCCAACAGTGGGACTTCT-CATGTAAATGTTCATGGATTGGGATTGGTCGATGAAAGG 970485 Query 80163 CCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 | |||| || |||| | ||||| | || || || || |||||||| || Sbjct 970484 CGCACGGTCGACCGCGAGGTCAATTACTGTGCGCTGAGGGATCTCCCATACGGT 970431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310350097840