Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyberlindnera_20jadinii_20[genbank_20GCA_5F001245095.1_202015-07-26] 7 sequences; 12,707,304 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq3 134 3e-26 seq4 127 5e-24 >seq1 Length=2451740 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||||||||| ||||||||||| || || | | ||| || || Sbjct 160687 TCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTGCC 160628 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || ||||| | | ||||||||| || |||| || ||||| Sbjct 160627 ATCCTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATACCCTCCTT 160568 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || || || |||||||||||| |||||||| | || || Sbjct 160567 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAGGACTCAACCTCCAAGGTAAT 160508 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | ||||| || || Sbjct 160507 GGTCTTACCGGTCAAGGTCTTAACGAA 160481 Score = 122 bits (134), Expect = 2e-22 Identities = 365/558 (65%), Gaps = 14/558 (3%) Strand=Plus/Minus Query 139432 ATGTTGACCAACGAACATGGTACAGCCTCAAACATTAAGTCGCGAGTCAACAGGCTTTCT 139491 |||||||| | || | ||||| || || ||||| |||||||| |||||||| || || Sbjct 1146794 ATGTTGACGGATGAGTACGGTACTGCGTCGAACATCAAGTCGCGTGTCAACAGACTGTCG 1146735 Query 139492 GTTCTTGGGGCGATCGTCTCTTGCCAGCAAAAGTTAAAACTTTTACGGGACGTCCCAAAG 139551 || ||| ||||||| || ||||| ||| | || || | | || ||| Sbjct 1146734 GTGCTTTCGGCGATCACGTCGACTCAGCAGAAGCTGAAGCTGTACACAAAGGTGCCACCA 1146675 Query 139552 AACGGACTTGTAATTTTTAGCGGAAGTGTTATGCTTCC---CGAAGGCAAGGAGAAAAAG 139608 ||||| | || |||| | || || ||| | | |||||| |||||||| ||| Sbjct 1146674 AACGGGTTGGTGATTTACTGTGG---TGATATCATCACGGACGAAGGTAAGGAGAAGAAG 1146618 Query 139609 GTTG-CATTCGACATTGAACCTTTCCGTCCAATCAGCCAGAAAGTTTACGCATGCGACAG 139667 | |||| || | || |||||| ||||||| | ||| | ||| || || | Sbjct 1146617 CTGAACATT-GATTTCGAGCCTTTCAAGCCAATCAACACGAAGCTGTACCTGTGTGATAA 1146559 Query 139668 TGTTTTCCATACGGATTGTCTGAAAGATCTGTTGTA---TGATGACCAATCTTATGGTTT 139724 ||||| || || || || ||| || | ||||||| | | | ||||| Sbjct 1146558 CAAGTTCCACACCGAGGCGCTCTCTGAGCTGCTGGAGGCTGATGACAACT---ACGGTTT 1146502 Query 139725 TATTATCGTGGATGGCTCCGGTGTTTTATTTGCGACTCTTTCAGGAAGTACAAGAACAAC 139784 || ||| ||||||| |||||| | | |||| || || || | || | || Sbjct 1146501 CATCATCATGGATGGTTCCGGTTCTCTGTTTGGTTTGCTATCTGGTAACACCCGTACCGT 1146442 Query 139785 AATCTCGAGTTTCCAAGTTTGCCTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCT 139844 ||| | | ||| ||| |||||||||||||||||| | || || ||||||||| | Sbjct 1146441 CATCACCAAGTTCACTGTTGACCTTCCAAAGAAGCACGGCCGTGGTGGTCAATCTGCTGT 1146382 Query 139845 GCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAA 139904 |||||| | |||||| || |||| ||||| |||||||| | ||||| ||||| ||| Sbjct 1146381 GCGTTTCGCAAGACTGAGAGAGGAGAAGAGACACAACTATGTTAGAAAGGTTGCTGAGGT 1146322 Query 139905 CGCAATACAGTGTTTTATCAAAGACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGG 139964 || | || ||||| |||| | | ||| ||| ||| |||| | || || Sbjct 1146321 TGCCGTTCAATGTTTCATCACCAATGATAAGGTCAACGTTAACGGTCTTGTCCTTGCTGG 1146262 Query 139965 TTCCGCAGAGTTCAAGAC 139982 ||| ||||| |||||||| Sbjct 1146261 TTCTGCAGACTTCAAGAC 1146244 >seq3 Length=2123196 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||||||||| ||||||||||| || || | | || || || Sbjct 1815525 TCTGAGAACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTACC 1815584 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| ||||| || || ||||| | | ||||||||| || || | || || || Sbjct 1815585 ATCCTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCTGGTGGGATACCCTCTTT 1815644 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 |||||||||||| || ||||| || |||||||| ||| |||||||| | || || Sbjct 1815645 GTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCAACCTCCAAGGTAAT 1815704 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || || || || || | ||||| || Sbjct 1815705 GGTCTTACCTGTAAGGGTTTTGACGAAAATTTGCATCTT 1815743 >seq4 Length=1931745 Score = 127 bits (140), Expect = 5e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||||||||| ||||| ||||| || || | | ||| || || Sbjct 933747 TCTAAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAGGTTCTGCC 933806 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||| |||| || || || ||||| || | | ||| ||||| || |||| || ||||| Sbjct 933807 ATCCTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGTGGAATACCCTCCTT 933866 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 |||||||||||| || ||||| || |||||||||||| |||||||| Sbjct 933867 GTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGATTCAACCT 933916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151896038555