Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Debaryomyces_20hansenii_20[genbank_20GCA_5F001682995.1_202016-07-10] 444 sequences; 11,620,116 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11 129 5e-25 seq392 105 6e-18 seq315 104 2e-17 seq277 102 7e-17 >seq11 Length=459 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| || ||||||||||||||||| ||||| | ||| ||||| Sbjct 3 CCACCTCTTAATCTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAG-- 60 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||||| | || || ||| | || || |||||||| || ||||||| Sbjct 61 ATAAGGTTCTACCGTCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAG 120 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| ||||| | ||| || | ||||||| | | | ||| |||| |||| Sbjct 121 GAATACCTTCCTTGTCTTGAATCTTGGACTTGACGTTGTCAATAGTATCAGAAGATTCGA 180 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || || || || | ||| || ||||| || ||||| Sbjct 181 CTTCTAAGGTGATAGTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 229 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| ||| ||||| || ||||||||||| ||||| | Sbjct 218 AAAAATTTGCATACCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGAAT 277 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| ||| ||| | || || | || || ||| | || || |||||| Sbjct 278 GTTGTAATCAG--ATAAGGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTT 335 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||| ||||||||||| ||||| | ||| || | |||||| | | | ||| Sbjct 336 TGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTA 395 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| || | ||||| || || || || | ||| || ||||| || ||| Sbjct 396 TCAGAAGATTCGACTTCTAAGGTGATAGTCTTACCTGTCAAAGTCTTGACAAAAATTTGC 455 Query 95006 AT 95007 || Sbjct 456 AT 457 >seq392 Length=124811 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| || || |||||||| || ||||||||||| | ||| ||||| Sbjct 104801 CCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAATCAG-- 104858 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||| || | || || || | |||||||||||||| || || || | Sbjct 104859 ATAAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTG 104918 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||| ||||| | || || | ||||||| | | | |||||| | || | Sbjct 104919 GAATACCTTCCTTGTCTTGGATCTTAGACTTGACGTTGTCAATAGTGTCTGAAGATTCAA 104978 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | || ||||| || ||||| | ||| || || || || ||||| Sbjct 104979 CTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 105027 >seq315 Length=97186 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA-- 94852 ||| || ||||||||||||||||| ||||| | ||| ||||| ||| ||| | Sbjct 2 CAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAG--ATAAGGTTCTACCG 59 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| | || || ||| | || || |||||||| || ||||| ||||||||||| ||| Sbjct 60 TCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTG 119 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| || | |||||| | | | ||| || | ||||| || | || ||| Sbjct 120 TCTTGAATCTTGGACTTGACATTGTCAATAGTATCGGAAGATTCGACTTCTAAGGTAATG 179 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 || || || || | ||||| || ||||| ||||| ||| || Sbjct 180 GTCTTACCTGTCAATGTTTTAACGAAGATTTGCATATTTATAA 222 >seq277 Length=184381 Score = 102 bits (112), Expect = 7e-17 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| || ||||||||||||||||| ||||| | ||| ||||| Sbjct 153 CCACCTCTTAATCTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAG-- 96 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| ||| | ||||| | || || ||| | || || |||||||| || ||||| | Sbjct 95 ATAAGGTTCTACCGTCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTG 36 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||||||| ||||| | ||| || | |||||| Sbjct 35 GAATACCTTCCTTGTCTTGAATCTTGGACTTGAC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288711983840