Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Debaryomyces_20hansenii_20[genbank_20GCA_5F001682995.1_202016-07-10] 444 sequences; 11,620,116 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq392 113 4e-20 seq11 113 4e-20 seq212 84.2 2e-11 >seq392 Length=124811 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| |||| || ||||||||||| || || ||||| | |||| || | Sbjct 104813 CTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAATCAGATAAGGTTCTACCA 104872 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | || |||| ||| ||||| || ||||| ||||| || Sbjct 104873 TCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTTG 104932 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | ||||| ||||| || ||||| | |||| Sbjct 104933 TCTTGGATCTTAGACTTGA-CGTTGTCAATAGTGTCTGAAGATTCAACTTCTAAGGTAAT 104991 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| || || ||||||||||| Sbjct 104992 GGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCAT 105027 >seq11 Length=459 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| |||| || ||||| ||||| || || ||||| | |||| || Sbjct 15 CTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACCG 74 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 75 TCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTTG 134 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||| || |||| || | || | || || ||||| |||||||| | || | Sbjct 135 TCTTGAATCTTGGACTTGA-CGTTGTCAATAGTATCAGAAGATTCGACTTCTAAGGTGAT 193 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || |||||||||||||| Sbjct 194 AGTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 229 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || ||||| ||||| || || ||||| | |||| || Sbjct 243 CTCAAAACCAAATGTAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACCG 302 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||| || || ||| | ||||||| ||| ||||| || ||||| ||||| || Sbjct 303 TCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTG 362 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||| || |||| || | || || ||||| |||||||| | || | Sbjct 363 TCTTGAATCTTGGACTTGACATTGTCAATAGTATCAGAAGATTCGACTTCTAAGGTGATA 422 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || |||||||||||||| Sbjct 423 GTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 457 >seq212 Length=365203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 205/311 (66%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||| | | ||||| |||||||||| ||| || || |||| || || | ||| Sbjct 168855 GATTTCAACTACAACTATTTTGGATTCAAGACCTTGGAAAGATCTTACTTATTGAGAATT 168796 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 | | ||||| |||||| | || ||| || | ||| | ||||| | || | || Sbjct 168795 AATGGTAAGGTTGCCGAAAGACCACAGCATTTGATTATGAGAGTCGCAGTCGGAATCCAT 168736 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || |||||||||| | | |||| | ||| | ||||||| |||| ||||||||| Sbjct 168735 GGTGATGACATCGAAAGAGTTATCGAATCGTACAACATGATGTCCCAAAGATTTTTCACT 168676 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 |||| || ||||| ||| ||| || || |||||| ||||||| ||||| Sbjct 168675 CACGGTTCCCCAACTTTATTCAACGCTGGTACTCCTAGCCCTCAGATGTCTTCTTGTTTC 168616 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 ||| | | || |||||| ||| |||||||| || || ||| || || Sbjct 168615 TTGGTTGCTATGAAAGAAGACTCTATCGATGGTATCTACGATACCTTGAAGACATGTGCC 168556 Query 123132 TTGATTTCCAA 123142 ||||||||||| Sbjct 168555 TTGATTTCCAA 168545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000691382240