Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Debaryomyces_20hansenii_20[genbank_20GCA_5F001682995.1_202016-07-10] 444 sequences; 11,620,116 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq212 196 9e-45 seq392 165 1e-35 seq11 149 1e-30 seq417 89.7 9e-13 >seq212 Length=365203 Score = 196 bits (216), Expect = 9e-45 Identities = 373/543 (69%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||| |||| | |||||||| ||||| || ||||| |||| || || Sbjct 282999 TTTTGGTAGTCACTAACTCTCTTTTCGAAGAAGTTGGTCTTTCCGGCTAAAGAAATGTTT 283058 Query 38892 TTCATAAAATCAAATGGATTTTTGGTA---TTATAATATTTTTCTCCTATC-AATACATA 38947 | |||||| || ||||| || |||| || ||| |||| | || | || || Sbjct 283059 TCCATAAAGTCGAATGGGTT---GGTAACGTTGTAAACCTTTT-TGTTACCTAAGGCAAC 283114 Query 38948 TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 |||||||||||| || || |||||||| ||||| ||||||| | ||| |||||||| || Sbjct 283115 TAATAATCTATCAGCAACGAATTCAACGTATTGACACATTAAGTTACAGTTCATACCTAA 283174 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 |||| | |||||| |||||| | | |||||||||||| || || |||| | || Sbjct 283175 TAATGAGATTGGTAAAGCATCAACGAAAAATTCTTTTTCGATAGTAACTGCTTCAGTGAT 283234 Query 39068 tatcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACA 39127 || | || | || | || | | ||| || | | | ||| ||| || Sbjct 283235 AAT--TCTTTCAACAATAACTGAATCTGGTCTGTTTTGTAAG-TGAGAGAATAATAAGCA 283291 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 ||| ||||| |||||||||||||| || | | | || ||||| || || ||||| || Sbjct 283292 TGCGAAATCAGTATGTAAACCTTCATCACGACAGATTAATTCGTTGGAGAAGGTTAAACC 283351 Query 39188 TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATAT 39247 |||||||| |||||||| || | ||| || || || ||||| || | ||||| || Sbjct 283352 AGGCATTAAACCTCTCTTCTTTAACCAGAAAATAGAAGCAAATGAACCACTGAAGAAAAT 283411 Query 39248 ACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAAT 39307 ||| || ||| || || || | || |||| | || || | | |||||| || Sbjct 283412 ACCTTCAACAGCTGCGAAGGCAACTAATCTTTCGCCGAATAACGCATCATCATCACTGAT 283471 Query 39308 CCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 ||| ||| |||||||| || || || |||||| | || || || || ||||| || || Sbjct 283472 CCATCTTAAAGCCCAATCAGCCTTCTTCTTGATACATGGGATGTTGTCGATAGCATTGAA 283531 Query 39368 TAA 39370 ||| Sbjct 283532 TAA 283534 >seq392 Length=124811 Score = 165 bits (182), Expect = 1e-35 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || ||| ||||| || || || | || || ||| || Sbjct 104792 TTCTTACCACCACCTCTTAATCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTG 104851 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 ||||| ||||| | || | || || ||||| |||||||| || |||||||| |||||| Sbjct 104852 TAATCAGATAAGGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGG 104911 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || ||| || || || ||||| ||||| Sbjct 104912 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTAGACTTGACGTTGTCAATAGTGTCTGAA 104971 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||||| |||||||| ||||||||||| || || | ||| || |||||||| Sbjct 104972 GATTCAACTTCTAAGGTAATGGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105030 >seq11 Length=459 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||||||||||| ||||| ||| || ||||| Sbjct 228 ATACCACCTCTTAATCTCAAAACCAAATGTAAAGTAGATTCTTTTTGAATGTTGTAATCA 287 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || |||| || ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 288 GATAAGGTTCTACCGTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGT 347 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| |||||||| || ||||| Sbjct 348 GGAATACCTTCCTTGTCTTGAATCTTGGACTTGACATTGTCAATAGTATCAGAAGATTCG 407 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || || || ||||| || || || || | || || ||||| Sbjct 408 ACTTCTAAGGTGATAGTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 457 >seq417 Length=227 Score = 89.7 bits (98), Expect = 9e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || ||||| || ||||||| ||||| ||| || ||||| Sbjct 109 ATACCACCTCTTAATCTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCA 168 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||| | || |||| || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 169 GATAAGGTTCTACCGTCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGG 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905130976495200