Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Debaryomyces_20hansenii_20[genbank_20GCA_5F001682995.1_202016-07-10] 444 sequences; 11,620,116 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq392 174 4e-38 seq315 150 4e-31 seq11 150 4e-31 seq277 113 1e-19 seq6 96.9 8e-15 >seq392 Length=124811 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | |||||||| ||||| | |||||||| | || ||||| || Sbjct 104812 TCTTAAGACTAAGTGCAAGGTGGATTCCTTTTGAATGTTGTAATCAGATAAGGTTCTACC 104871 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||||||||| | || ||||||||| || |||||||||||||| Sbjct 104872 ATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 104931 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || || || |||||||| | ||| || ||||| || || Sbjct 104932 GTCTTGGATCTTAGACTTGACGTTGTCAATAGTGTCTGAAGATTCAACTTCTAAGGTAAT 104991 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | ||||||||| Sbjct 104992 GGTCTTACCAGTTAAAGTCTTGACGAAAATTTGCATTTT 105030 >seq315 Length=97186 Score = 150 bits (166), Expect = 4e-31 Identities = 160/210 (76%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||| ||||||||||| | |||||||| | || ||||| || || |||| || Sbjct 11 GTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACCGTCCTCTAATTG 70 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || ||||| || | || ||||||||| || |||||||||||||||||||| ||||| Sbjct 71 CTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTTGTCTTGAATCTT 130 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| || || || || || | ||| || ||||| || || ||||| || || Sbjct 131 GGACTTGACATTGTCAATAGTATCGGAAGATTCGACTTCTAAGGTAATGGTCTTACCTGT 190 Query 225690 CAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 ||| ||||| | ||| | |||||| ||||| Sbjct 191 CAATGTTTTAACGAAGATTTGCATATTTAT 220 >seq11 Length=459 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||| ||||||||||| | |||||||| | || ||||| || Sbjct 242 TCTCAAAACCAAATGTAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACC 301 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| ||||| || ||||| || | || ||||||||| || |||||||||||||| Sbjct 302 GTCTTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 361 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| ||| || || || || || | ||| || ||||| ||||| Sbjct 362 GTCTTGAATCTTGGACTTGACATTGTCAATAGTATCAGAAGATTCGACTTCTAAGGTGAT 421 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | || | |||||| Sbjct 422 AGTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 457 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||| ||||||||||| | |||||||| | || ||||| || Sbjct 14 TCTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACC 73 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || |||| ||||| || ||||| || | || ||||||||| || |||||||||||||| Sbjct 74 GTCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGAGGAATACCTTCCTT 133 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| || || || || || || | ||| || ||||| ||||| Sbjct 134 GTCTTGAATCTTGGACTTGACGTTGTCAATAGTATCAGAAGATTCGACTTCTAAGGTGAT 193 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | || | |||||| Sbjct 194 AGTCTTACCTGTCAAAGTCTTGACAAAAATTTGCAT 229 >seq277 Length=184381 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| | ||| ||||||||||| | |||||||| | || ||||| || Sbjct 142 TCTCAAAACTAAGTGCAAAGTAGATTCTTTTTGAATGTTGTAATCAGATAAGGTTCTACC 83 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || |||| ||||| || ||||| || | || ||||||||| || |||||||||||||| Sbjct 82 GTCCTCTAATTGCTTACCGGCGAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCCTT 23 Query 225618 GTCTTGGATCTT 225629 |||||| ||||| Sbjct 22 GTCTTGAATCTT 11 >seq6 Length=41443 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || ||||||||||| |||||||| Sbjct 11641 GAAAATTTGACCATCGGTAATGGAAATAACATTAGTTGGAATATAAGCAGAGACATCACC 11582 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 |||| ||||| | | ||||| || |||| || ||||||||| Sbjct 11581 ACCTTGGGTTTCAATGATTGGTAAAGCAGTTAAAGAACCACCACCA 11536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524415988136