Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq73 244 1e-59
seq24 104 3e-17
>seq73
Length=484926
Score = 244 bits (270), Expect = 1e-59
Identities = 755/1155 (65%), Gaps = 30/1155 (3%)
Strand=Plus/Minus
Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763
||||||||| |||| || || || || ||||||| ||| | |||| | |||||
Sbjct 51424 TGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTC 51365
Query 53764 AGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820
||||| | || |||| ||| ||||| | || | || || ||||| |||
Sbjct 51364 TGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 51308
Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880
||||||||||| || || |||||||| | ||||| || | || | ||| | || |
Sbjct 51307 GCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGA 51248
Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT--ATAGT 53938
| ||||| ||||||||| | | | | | || | || || ||| |
Sbjct 51247 ATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACT 51192
Query 53939 GTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996
||||| ||||||||| ||||| | |||| | | |||||||| |||| |
Sbjct 51191 TCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132
Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056
||||||||| | ||||||||||| | || || | ||||| |||||||| |||||||
Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072
Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115
| | || ||| || ||||| | | | | |||||| || || ||||||| | |||
Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013
Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175
||||||||| | | | ||||| ||||| || || | ||| || | | | |||||
Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953
Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235
|| ||||| || || ||||| | ||||| || ||||| || |||| | || ||||||
Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893
Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295
| ||||||||| || ||| ||||| ||||| || ||| ||| | || || || |
Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833
Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355
|| ||||| || || || || | || || || | || ||| || | |||
Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773
Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415
|||||||| || || || || || ||| |||| | | || || || ||||| ||
Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713
Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475
|| ||||| ||| | || | ||||||||||| || || || | || | ||
Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653
Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 54535
| | ||||| |||||||| || || || ||||| ||| || || || || |||
Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593
Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595
||||| | |||||| || || | ||||| | ||| || | || | ||| ||
Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533
Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 54653
||||| || || || |||||||| | ||| ||||| || || ||||| | |||
Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475
Query 54654 CTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT----TGAAATA 54709
|||| ||||| | ||| | ||| | || |||| | ||| || || ||
Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGTCTGTTGAGAGATC 50419
Query 54710 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCA 54769
|| || || | || ||||| || || ||||| | | | ||| || || |
Sbjct 50418 ATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-GGA 50360
Query 54770 CTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828
| | ||| | || || || | ||||| ||||| || ||||| || | ||| || |||||
Sbjct 50359 CGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGAAT 50300
Query 54829 GGCATAATCCGGATG 54843
||||||||| |||||
Sbjct 50299 GGCATAATCTGGATG 50285
>seq24
Length=853129
Score = 104 bits (114), Expect = 3e-17
Identities = 295/443 (67%), Gaps = 14/443 (3%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|| ||||| ||||| || || || || || || || || ||||| | | ||| |||||
Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200
Query 23904 TCCATGAAATCGGATGGATTGG-TAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962
|||||||| ||| | || || | | || || ||| | || | | |||| || |
Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAGTAT-TTCTCGTTACCAAG--AGCCGT 483256
Query 23963 CAA---TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA- 24018
||| || ||| ||||| ||||| |||||| ||||| | | | ||||| || |
Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316
Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078
|||| | ||| ||||| | || | |||||||| ||||| | || || || || |
Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375
Query 24079 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136
| ||| || | || | | || || || | | | || || ||| | | ||
Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433
Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196
||| || ||| || || |||||||| | | || | ||||| ||||| || || ||
Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493
Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256
| ||| ||||||||||| || |||||||| || | ||||| || ||| ||||||||
Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553
Query 24257 TCCTTCTACTGCCGCAAAGGCAA 24279
||||| || || || || ||||
Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576
Score = 89.7 bits (98), Expect = 6e-13
Identities = 196/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455
|| || ||||| || ||||||| || || | || || || ||||| || ||
Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806
Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515
|| || || || |||||||| | ||||| | |||||| ||||| || || || ||
Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866
Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575
| || || || || || || || || ||| || || ||||| | || || | |
Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926
Query 24576 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 24632
|| || || || ||||| |||||||| || | || ||| || || | |||
Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685
| |||||| | ||||| || || ||||||||||| |||||||| | ||||||
Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593717443948800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |