Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq73 244 1e-59 seq24 104 3e-17 >seq73 Length=484926 Score = 244 bits (270), Expect = 1e-59 Identities = 755/1155 (65%), Gaps = 30/1155 (3%) Strand=Plus/Minus Query 53704 TGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 53763 ||||||||| |||| || || || || ||||||| ||| | |||| | ||||| Sbjct 51424 TGCAATAGAGGCCAAGTTGCAGACAGCAACCTCATCCGCAGATGAGTATTCGACAATCTC 51365 Query 53764 AGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 ||||| | || |||| ||| ||||| | || | || || ||||| ||| Sbjct 51364 TGTGCACAAGTTGGAGCTACG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTT 51308 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 ||||||||||| || || |||||||| | ||||| || | || | ||| | || | Sbjct 51307 GCACGCATCCTTGTAGAGCATGAATGGGTTTCCAGTCTCGGTTTGTGCTTCAAGGATGGA 51248 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT--ATAGT 53938 | ||||| ||||||||| | | | | | || | || || ||| | Sbjct 51247 ATACCAGAGCTTTTGAGCCTTTAC----GGTCTTTCGGCCCTTGCCCTCGCGCTCATACT 51192 Query 53939 GTA--TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 ||||| ||||||||| ||||| | |||| | | |||||||| |||| | Sbjct 51191 TCTCGTACAAAGCTTCAAACTCATCTCCGTAGACATCTGCTAGACCAGGACACTCATTTG 51132 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 ||||||||| | ||||||||||| | || || | ||||| |||||||| ||||||| Sbjct 51131 GACACATCAGGGTCCACTCTCCGTTTTTCTCAACCCTCTTCATGAAGAGATCGGGAATCC 51072 Query 54057 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 | | || ||| || ||||| | | | | |||||| || || ||||||| | ||| Sbjct 51071 ACAAGGC-ATAGAAGAGATCGCGTGCACGAACTTCCTCCTTACCATGATTCTTTCTGAGA 51013 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | ||||| ||||| || || | ||| || | | | ||||| Sbjct 51012 TCGAGGAACTCGAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAGGCACCAGGA 50953 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || || ||||| | ||||| || ||||| || |||| | || |||||| Sbjct 50952 CGCTTGTTACCACCTTGATCAACATATCTGGCTGTGTTGTTGAAAACACGCAGCATTGGC 50893 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||||||| || ||| ||||| ||||| || ||| ||| | || || || | Sbjct 50892 ACAATACCATTCGAGAAACCGTTGGTGCCGGAAATGTAGGAGCCAGTAGCTCGGATTCTG 50833 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 || ||||| || || || || | || || || | || ||| || | ||| Sbjct 50832 TGGATATTGAGACCAATGCCACCGGCATTCTTCGAAATCATAGCACATGTCTTCAGGGTA 50773 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415 |||||||| || || || || || ||| |||| | | || || || ||||| || Sbjct 50772 TCATAGATACCATCAATGCTGTCTTCCTTCATATCTACGAGGAAGCATGATGACATCTGA 50713 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 || ||||| ||| | || | ||||||||||| || || || | || | || Sbjct 50712 GCCTGAGGGGTTCCAGCACTGAAGAGTGTAGGAGAAGCATGTGTGAAGTACTTGTTCGAC 50653 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACA 54535 | | ||||| |||||||| || || || ||||| ||| || || || || ||| Sbjct 50652 ATCAAGTTGTATGTCTCGATTGCGGATTCAATATCTTCGCCATGGATACCAACAGCCACA 50593 Query 54536 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGAT 54595 ||||| | |||||| || || | ||||| | ||| || | || | ||| || Sbjct 50592 CGCATGATCATGTGTTGTGGGCGCTCAACCACGGCGTTATTAAGACGGAGGAGGTATGAA 50533 Query 54596 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAA 54653 ||||| || || || |||||||| | ||| ||||| || || ||||| | ||| Sbjct 50532 CGCTCCAATGTCTTGAATCCAAAATATTGGTAGTTGAAA--TCACGATCGTAGACAATCG 50475 Query 54654 CTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT----TGAAATA 54709 |||| ||||| | ||| | ||| | || |||| | ||| || || || Sbjct 50474 CTGAATTGAGCTCTGCCTCGTGTTTCATGAC-ACAT---TCGTATGTCTGTTGAGAGATC 50419 Query 54710 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCA 54769 || || || | || ||||| || || ||||| | | | ||| || || | Sbjct 50418 ATGGGCGATGGCTTGCCATTGCGTGGGTTAACATAATGGTAGAGATCTGAGATGAC-GGA 50360 Query 54770 CTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 54828 | | ||| | || || || | ||||| ||||| || ||||| || | ||| || ||||| Sbjct 50359 CGAGAATTGCTTCTTGGTCTGCTTGTGGAGATTGGAAACGGCGATACGAGCCGCGAGAAT 50300 Query 54829 GGCATAATCCGGATG 54843 ||||||||| ||||| Sbjct 50299 GGCATAATCTGGATG 50285 >seq24 Length=853129 Score = 104 bits (114), Expect = 3e-17 Identities = 295/443 (67%), Gaps = 14/443 (3%) Strand=Plus/Plus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || ||||| ||||| || || || || || || || || ||||| | | ||| ||||| Sbjct 483141 TTCTGGTAATCACCAACCCGCTTCTCAAAGAAGTTGGTCTTACCAGCGAGTGAGATATTC 483200 Query 23904 TCCATGAAATCGGATGGATTGG-TAACATTATAGATTCTTTTAAATCCCAATTCAGAAAT 23962 |||||||| ||| | || || | | || || ||| | || | | |||| || | Sbjct 483201 TCCATGAAGTCGAAGGGGTTTGCTGAC-TTGTAGTAT-TTCTCGTTACCAAG--AGCCGT 483256 Query 23963 CAA---TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTA- 24018 ||| || ||| ||||| ||||| |||||| ||||| | | | ||||| || | Sbjct 483257 CAAAAGTCGATCAGCGACGAACTCGATATATTGCTTCATGAGAGCGGAGTTCATGCCGAG 483316 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 |||| | ||| ||||| | || | |||||||| ||||| | || || || || | Sbjct 483317 TAAGGCACAGGGGA-GAGCCTCTGTTAAGAATTCTTGCTCAATGGCAACAGCTTCGGTGA 483375 Query 24079 TAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACA 24136 | ||| || | || | | || || || | | | || || ||| | | || Sbjct 483376 TGATA--TCCTGGACAGCCTGTTTGCTTGGGCGGTGCTTCAAGTGAGAAAATAGAAGGCA 483433 Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 ||| || ||| || || |||||||| | | || | ||||| ||||| || || || Sbjct 483434 TGCAAAGTCGGTATGCAGGCCCTCGTCACGAGAGATGAGCTCGTTCGAAAAGGTCAGACC 483493 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 | ||| ||||||||||| || |||||||| || | ||||| || ||| |||||||| Sbjct 483494 AGCCATGAGGCCACGCTTCTTCAGCCAAAAGATAGCTGCAAAAGAACCACTGAAGAAAAT 483553 Query 24257 TCCTTCTACTGCCGCAAAGGCAA 24279 ||||| || || || || |||| Sbjct 483554 GCCTTCCACGGCAGCGAATGCAA 483576 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || ||||| || ||||||| || || | || || || ||||| || || Sbjct 483747 TCCTTGACATACGTGTCAATCAGGAGGGAGTATGTCTCTGAGTGGATGTTCTCCATCATG 483806 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || || || || |||||||| | ||||| | |||||| ||||| || || || || Sbjct 483807 ATCTGGAAACCATAGAAACAACGCGCCTCAGGAATCTGCACTTCACCACTGAAACGCTCA 483866 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 | || || || || || || || || ||| || || ||||| | || || | | Sbjct 483867 ACCAAGTTCTCGTTGACGATGCCATCCGAGGCGGCGAAGAACGCGAGAACGTGAGACACA 483926 Query 24576 AAATATTTTTCGTCTGGTGTTAGT---TTATTCCAATCATTGATATCTTTAGATATATCC 24632 || || || || ||||| |||||||| || | || ||| || || | ||| Sbjct 483927 AAGTACCGCTCATCATCATTTAGTCTGTTATTCCAGTCGTGGAGATCCTTGGAAAGATCA 483986 Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 | |||||| | ||||| || || ||||||||||| |||||||| | |||||| Sbjct 483987 ATTTCTTCGGCGGTCCAGAAGGAGGCCTCTGCCTTCTTATACATCTGCCAGAT 484039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717443948800