Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26] 560 sequences; 41,384,521 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq24 145 8e-30 seq46 125 7e-24 seq22 125 7e-24 >seq24 Length=853129 Score = 145 bits (160), Expect = 8e-30 Identities = 266/387 (69%), Gaps = 2/387 (1%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 || ||| |||| |||||||||| ||||| | | ||||| | || || || || Sbjct 483652 CCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGACAAGAAGTCCACC 483593 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 |||| | | || |||| || ||||| ||||| || ||| | ||||| || ||| Sbjct 483592 TTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTTT 483533 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || || || |||||||| ||||| || ||||||||| | || ||||| || |||||| Sbjct 483532 GCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGAG 483473 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 |||||||| | |||||||| |||||| ||||||||| || | || || || ||| Sbjct 483472 CTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCTATTTTCTCACTTG 483413 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 ||| || || ||| | ||| ||| ||| ||||||| || || ||||| ||| Sbjct 483412 AAGCACCGCCCAAGCAAACAGGCTGTCCAGGATATCATCACCGAAGCTGTTGCCATTGAG 483353 Query 117269 CAGCGCTTCCTCACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | || || || || || |||| | | || || | || | || || Sbjct 483352 CAAGAATTCTTAACAGAGGCTCTCCCCTGTGCCT-TACTCGGCATGAACTCCGCTCTCAT 483294 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354 | |||||| |||||||||||||| || Sbjct 483293 GAAGCAATATATCGAGTTCGTCGCTGA 483267 Score = 136 bits (150), Expect = 4e-27 Identities = 205/288 (71%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || ||||| ||||| || |||||||||| ||| || | || || Sbjct 484039 ATCTGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGGACCGCCGAAGAAATTGATCTT 483980 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | || || | ||||| | || | Sbjct 483979 TCCAAGGATCTCCA-CGACTGGAATAACAGACTAAATGATGATGAGCGGTACTTTGTGTC 483921 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||||||| || ||||||||||||||||| |||| ||||| Sbjct 483920 TCACGTTCTCGCGTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTTGAGCG 483861 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 |||| | || |||||| | | |||||||| || ||||| || || |||||| || Sbjct 483860 TTTCAGTGGTGAAGTGCAGATTCCTGAGGCGCGTTGTTTCTATGGTTTCCAGATCATGAT 483801 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT 116919 ||||||| | ||||| || | || || ||| || |||||||| || Sbjct 483800 GGAGAACATCCACTCAGAGACATACTCCCTCCTGATTGACACGTATGT 483753 >seq46 Length=1090308 Score = 125 bits (138), Expect = 7e-24 Identities = 142/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| |||||||| | || ||||| || |||||| | | | |||| | ||| Sbjct 104961 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTT-AAG 104903 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||||||| |||| || || || ||||||| ||| ||| Sbjct 104902 AGCAAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGC 104843 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || ||||| |||||| ||||||||||||||| | || || Sbjct 104842 AAGCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTT 104783 Query 40891 CATCTAGT 40898 ||||| || Sbjct 104782 CATCTTGT 104775 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| ||| | || || || | || Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| || || ||||| ||||| ||||||| Sbjct 104467 GACACCATCGACAACG-TGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 104409 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 104408 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAA 104349 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| ||| || || Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCA 104325 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||| || || ||||||| Sbjct 104695 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCA 104637 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| ||||| || || | || || ||| |||||||| Sbjct 104636 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAA 104577 Query 40869 CATCCAGAAGGA 40880 |||||| || || Sbjct 104576 CATCCAAAAAGA 104565 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || || ||||| | || || ||| || | Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| ||||| ||||| ||||||| Sbjct 104239 GATACCATTGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 104181 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||| | ||| ||||| ||||| || || | || || | | ||||||||| Sbjct 104180 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAA 104121 Query 40869 CATCCAGAAGGA 40880 |||||||||||| Sbjct 104120 CATCCAGAAGGA 104109 >seq22 Length=1308897 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || |||||||| || || |||||| | || || || | || Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| ||||| ||||| ||||||| Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || ||||| ||||| || || | || |||||| |||||||||| Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGT 1149374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215593465600