Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20candidum_20[genbank_20GCA_5F000743665.1_202014-08-26]
560 sequences; 41,384,521 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq24 145 8e-30
seq46 125 7e-24
seq22 125 7e-24
>seq24
Length=853129
Score = 145 bits (160), Expect = 8e-30
Identities = 266/387 (69%), Gaps = 2/387 (1%)
Strand=Plus/Minus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028
|| ||| |||| |||||||||| ||||| | | ||||| | || || || ||
Sbjct 483652 CCCTGCATCAAGAAGAAGGCCGATTGGGCAGTTAGATGGATTCAAGACAAGAAGTCCACC 483593
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
|||| | | || |||| || ||||| ||||| || ||| | ||||| || |||
Sbjct 483592 TTCGCCCAACGTTTGGTTGCATTCGCTGCCGTGGAAGGCATTTTCTTCAGTGGTTCTTTT 483533
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
|| || || |||||||| ||||| || ||||||||| | || ||||| || ||||||
Sbjct 483532 GCAGCTATCTTTTGGCTGAAGAAGCGTGGCCTCATGGCTGGTCTGACCTTTTCGAACGAG 483473
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
|||||||| | |||||||| |||||| ||||||||| || | || || || |||
Sbjct 483472 CTCATCTCTCGTGACGAGGGCCTGCATACCGACTTTGCATGCCTTCTATTTTCTCACTTG 483413
Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268
||| || || ||| | ||| ||| ||| ||||||| || || ||||| |||
Sbjct 483412 AAGCACCGCCCAAGCAAACAGGCTGTCCAGGATATCATCACCGAAGCTGTTGCCATTGAG 483353
Query 117269 CAGCGCTTCCTCACCGAAGCGCT-GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327
|| ||| | || || || || || |||| | | || || | || | || ||
Sbjct 483352 CAAGAATTCTTAACAGAGGCTCTCCCCTGTGCCT-TACTCGGCATGAACTCCGCTCTCAT 483294
Query 117328 GTCGCAATACATCGAGTTCGTCGCCGA 117354
| |||||| |||||||||||||| ||
Sbjct 483293 GAAGCAATATATCGAGTTCGTCGCTGA 483267
Score = 136 bits (150), Expect = 4e-27
Identities = 205/288 (71%), Gaps = 5/288 (2%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| || ||||| ||||| || |||||||||| ||| || | || ||
Sbjct 484039 ATCTGGCAGATGTATAAGAAGGCAGAGGCCTCCTTCTGGACCGCCGAAGAAATTGATCTT 483980
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | | || || | ||||| | || |
Sbjct 483979 TCCAAGGATCTCCA-CGACTGGAATAACAGACTAAATGATGATGAGCGGTACTTTGTGTC 483921
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || ||||||||| || ||||||||||||||||| |||| |||||
Sbjct 483920 TCACGTTCTCGCGTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTTGAGCG 483861
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
|||| | || |||||| | | |||||||| || ||||| || || |||||| ||
Sbjct 483860 TTTCAGTGGTGAAGTGCAGATTCCTGAGGCGCGTTGTTTCTATGGTTTCCAGATCATGAT 483801
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT 116919
||||||| | ||||| || | || || ||| || |||||||| ||
Sbjct 483800 GGAGAACATCCACTCAGAGACATACTCCCTCCTGATTGACACGTATGT 483753
>seq46
Length=1090308
Score = 125 bits (138), Expect = 7e-24
Identities = 142/188 (76%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| |||||||| | || ||||| || |||||| | | | |||| | |||
Sbjct 104961 TCACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGACACCATCGACAACGTT-AAG 104903
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| |||||||||||| |||| || || || ||||||| ||| |||
Sbjct 104902 AGCAAGATCCAAGACAAGGAGGGCATCCCCCCGGATCAACAGCGTCTCATCTTCGCTGGC 104843
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| || ||||| |||||| ||||||||||||||| | || ||
Sbjct 104842 AAGCAGCTCGAGGACGGCCGAACCCTTTCCGACTATAACATCCAGAAGGAGTCTACCCTT 104783
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 104782 CATCTTGT 104775
Score = 109 bits (120), Expect = 6e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || ||||| ||| | || || || | ||
Sbjct 104527 ATGCAAATCTTCGTCAAGACTCTCACTGGTAAGACCATTACCTTGGAAGTTGAGTCGTCC 104468
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| | ||| || |||| || || ||||| ||||| |||||||
Sbjct 104467 GACACCATCGACAACG-TGAAGTCCAAGATTCAAGATAAGGAGGGTATCCCACCGGACCA 104409
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||| | ||| ||||| ||||| || || | || || | | |||||||||
Sbjct 104408 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGACGAACTTTGAGCGACTACAA 104349
Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892
|||||| |||||| ||| || ||
Sbjct 104348 CATCCAAAAGGAGAGCACTCTCCA 104325
Score = 109 bits (120), Expect = 6e-19
Identities = 141/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 104755 ATGCAAATTTTTGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAATCGTCA 104696
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| ||||| || || |||||||
Sbjct 104695 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGAATTCCTCCGGACCA 104637
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || || |||| || ||||| ||||| || || | || || ||| ||||||||
Sbjct 104636 ACAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACTCTCTCTGACTACAA 104577
Query 40869 CATCCAGAAGGA 40880
|||||| || ||
Sbjct 104576 CATCCAAAAAGA 104565
Score = 96.9 bits (106), Expect = 4e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || || || ||||| | || || ||| || |
Sbjct 104299 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATCACTCTGGAAGTGGAATCCTCG 104240
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || || | ||||| ||||| ||||| |||||||
Sbjct 104239 GATACCATTGACAACG-TCAAGTCTAAGATCCAGGACAAGGAGGGTATCCCACCGGACCA 104181
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| || ||||| | ||| ||||| ||||| || || | || || | | |||||||||
Sbjct 104180 ACAGCGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGTCGTACTTTGAGCGACTACAA 104121
Query 40869 CATCCAGAAGGA 40880
||||||||||||
Sbjct 104120 CATCCAGAAGGA 104109
>seq22
Length=1308897
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || |||||||| || || |||||| | || || || | ||
Sbjct 1149166 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATCACCCTTGAGGTGGAGTCTTCC 1149225
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| ||||| ||||| |||||||
Sbjct 1149226 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAA 1149285
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| || ||||| ||||| || || | || |||||| ||||||||||
Sbjct 1149286 CAGCGCTTGATCTTTGCCGGCAAGCAGCTTGAGGATGGTCGTACCCTCTCCGACTACAAC 1149345
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || ||||| ||
Sbjct 1149346 ATCCAGAAGGAGTCCACCCTTCATCTCGT 1149374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215593465600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |